Transcript Information: S_Transcript_51391.p1


Annotated TAIR IDAT1G27595.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9596475-9602917 | Forward length=961
E-Value1.7E-298
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.6208510125671
Replicate 211.63916218921
Replicate 311.859027277908
Condition 2: 8 Hour
Replicate 111.781272235578
Replicate 212.038587230283
Replicate 311.100328186745
Condition 3: 24 Hour
Replicate 112.150701232127
Replicate 210.331277126124
Replicate 310.81216696008


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51391.p1 GENE.S_Transcript_51391~~S_Transcript_51391.p1 ORF type:complete len:1325 (+),score=311.56,Symplekin_C|PF12295.4|4.5e-64,DUF3453|PF11935.4|1.1e-47 S_Transcript_51391:344-4318(+)
ATGGCGGATAATTCAACAAGAGAGCAAGCACTCTCTCTCCTTGCTACTGCTAACAATCATGGAGATTTGGCTGTCAAGCTCTCTTCATTACGCCAAGTCAAAGACATTCTCTCTTCCTCCTTTTCTTCTACCGAAAAACATCAACAACAACTTCAACAACCTATTGCTTCTGATGTTTTCCCCTTTTTGGTCGAGCTTCAATCTTCTCCTGAATGTCTCGTTCGCAAATTCCTTTTGGAGGTAATAGAGGAGATTGGTTTGAGAGTTCTGGACCATTCTTCGATGCTAATGCCAGTCCTGTTGGCTCTTGTAAAGGATGAAGATCATGCTGTTGCTCGTCAGTCTATTGTTTGTGGGACGAAATTTTTATGTGCTATAGTTGAGGAGATGGCTTGGCAGTTTCATCACCATGGTAAGGTTGATAGATGGGCTGAGGAAATCTGGATTCAGATGATTGAGTTCAAGGATGTTGTTTGCTCTCTTGTTTTTGATCCGGTTTCCATGGGGACAAGGTTATTGGCATTTAAGTTCTTGGAAACTTGTATATTAATGTTTACGCCAGATACAAGCGAATCTGACAGACCAACCTTTGGAGGCAATGAACGCAGGTTCAATGTTTCGTGGCTCACTAGTGGCCACCCAACTCTAGATCCAACAAAACTCAAATCAGAAGCTAATATGTTATTAACCAATTTATTAGATATGTTGCAATCATCGAGCAGTCTTCCTGGTCCAGTGACAATTGCCATTGTCAATTGTCTGGCAACTATTGCAAGAAAGAGACCTGATCACTATGGTAAAGTGTTGTCTGCACTTCTTGATTTTCATTCAAACTTGGAGATGACACAAGAGGGTCATATGGCTAGCTTGCAATATTCTGTCAGGAGTGCCTTGTTGGGATTCCTGAGATGTACTCATCCAGTCATCAGTGAGTCCAGGGATAGATTGGTCAGGCTCCTGCGGTCAATGAATGCTGGGGATGCTGCTGATCAAGCTCTTCGACAAGTTGACAAAATAATGAGAAATAATGAGCGCTTATCACGTGATGCTCGGGTTAAGGAGGATCAGCCATCCAGCCAGCAGCTATTATCTGGTGAAAGCATGAAGAGGAGGTTGGTGCCTTCTGAAATTGAAGACCCTATTAATGGTCCAGAGATGGCTTCCAAACGCATGCGTTTTACTTCAAATGGGAAGTCATCGGATCTGGTTCAGATGAATGAGTCTGGAGATGATAAGCACACTCTTAATGGGATATCTTCTAAAGTTCCAATGCTGAATTGTAATTTGAACCCTGTTGAGCAAATGATTGCTGTAATTGGTGCTTTACTAGCCGAAGGTGAAAGAGGTGCTGAGTCACTTGAACTTTTAATATCTCAAATTCATCCTGATCTGCTAGCTGATATTGTCATCACCAATATGAAGCATTTGCCTAAGACTCCACCACTAGCAAAACCCGGTAGCTTGCCCTTAAATGCACAACCACAATATACTTCTGTAGCCACAGTTGTGAAGGCTGCTGCTCTTGAGACGCCAACTTTACCAGTTGAATCTTCAGTTCCTACCTCACAAGGGTCCATTACAGCAACTAATGTCAGCAAATCTCTTCCTGATATCTCTAACTCTACCAACCCCCCTGCAGATTCTAGACGTGATCCAAGAAGGGATCCCCGTCGCTTGGATCCACGGCGAGTTGCCACACCTGTTGAAGCTCAGTTGCTACCTACTCCAGAGGAGATCACTAATGTGCAGCCTGGGTTGGAATGTCCTGCTTCTGTAAATAAATCTCTATCTCTACCCGCTGTGCCAAGCACTGAGCAGCTCTGGCCACAGTCAATGCCAGCCTCTGAAGTTGAGGGGAGACTTTTGAAAATTGAACAAGGAACCCAGCAAGAGGAATTAGCAGATGGAGTGAGGGAGTTGTCATCCAGTTCAGAAGTTAAAGTGTCTGTTGAACACACAATTTCTCCTGGTGCTGATGTTGATGAGAGCTTCATGGTGCCATTATCCTTGGATATTCCGTTAACAAATGCAACAGACGCCTCATCGGCTGAAGAGTTTGATGACTATTCTCCTGCTGTTTCAAACATATCTGCATCTGAGGAGACTAGTCAAGAGTTGCCCCAAGTTCCATCTTACATTGATTTATCGCAGTATCAGACACAATCTGTGAGGAAATTGGCAGTTGAACGGATTGTTAAGTCATACAAACATCTGAAAAATAAAGATTTGTGCCAGACTAGGATGGCACTACTTGCACGATTGGTCACTTGGATGGATGCCGATGAGTTCTTAGCAATGATGGTGCAAGAGGATATGGTATTGGATTACAGAGATCAACAGGGACATGAGCTTGTAATGCATATATTATACCATCTTGATTGTCTGAGGACCGTAGAGTCAAGTGACCAATCGCCGAGGACTGCTGACTTGTATGAGAAGTTCCTTATTGGAGTGGCAAAATCTTTGCTCGATACTCTGCCGGCTTCAGACAAGTCTTTCAGCAGACTACTTGGTGAAGCTCCAACATTGACTGACTCTATTATGAGACTGCTAGAGAATCTGTGCTGCCCTGATGGTTCTGATCAGCGGGGAAAAGATAATCGAGATGACCGTGTCACTCAGGGCCTTGGGGTTGTTTGGAGCTTAATTCTTGGGCGACCACTTAACCGGCAGGCCTGTTTGAACATTGCACTGAAGTGTGCTGCTCATTCAGAAGATGATACTCGTGCTAAGGCTATCCGGCTGGTTGCAAACAAACTTTATCCACTGAAATATGTGTCTGAAACAATTGAGCAGTATGCTACAAACATGTTGCTCACAGCTGTCAACAGCACTGCAGAAGCTGATGCTTCACAGTGTGGGTCCAGTGATCCCAGAAGAGATCAAGTAGGATTTGAAGAAACTTCTGTTAGTGGTTCTCAACATTCAGAGTCTGTCAGCGTATCACTTCCTGAAGCTCAACGTCTGATATCTTTGTATTTTGCCCTTTGTACAAAGAAACCTGGCCTTCTTCAGCTTGTATTCAATGTCTATGCGAGGTCTGGTAGAAGTGTGAAGCAGGCTATCCATCGTCATATTCCAATTTTGCTGAGGACACTGGGGTCAGCTTATTCTGAACTACTACGCATAATATCTGATCCACCTTTAGGAAGTGAAAACTTGCTAATGTTGGTGCTCCAAGTACTCGCTGAACAAACAACTCCTTCACCTGATCTTATTACTACTGTCAAACATTTATACGAAACTAAGCTGAAGGATGCTACAGTCCTGATTCCAATGCTATCTTCACTATCGAAGGATGAGGTTTTGCCCATATTTCCTCGGCTTGTTGACCTTCCATTAGATAAATTTCAGCAGGCATTGGCTCACATTTTACAGGGCTCAGCTCATACTGGTCCAGCTTTAACACCTGCTGAAGTCTTGGTTGCTATCCATGACATCGTACCAGAGAAAGAAGGAATTGCACTTAAAAAGGTAACAGATGCTTGCTCAGCTTGTTTTGAGCAGCGCACTGTATTCACACAGCATGTTTTGGCAAAGGCTTTGAACCAGATGGTTGATCGAACACCTCTTCCTCTTCTTTTCATGAGAACAGTTATCCAGGCAATTGATGCTTTTCCTACACTGGTTGATTTTGTCATGGAGGTACTCTCCAAGCTCGTTAGTAGACAGATCTGGAAAATGCCTAAGCTTTGGGTAGGATTTATGAAATGCGTGTCGCAGACACAGCCACATTCTTTCTGTGTATTGTTGCAGTTACCTGCACCTCAGCTTGAAAGTGCTCTAAACAAATACACTAGTCTCAGAGGGCCTCTTGCCGCTTATTCAAGCCAATCCAGCATAAAAAGTTCATTACCGAGATCAACCCTTTCTGTTCTTGGTCTTGCAAATGAATCGCACTTGACACCACCACATGTTGCATCTCCCATGCATACTTCTGATACGAGTTCTGTCCGTGGGGCGACACCAACGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51391.p1 GENE.S_Transcript_51391~~S_Transcript_51391.p1 ORF type:complete len:1325 (+),score=311.56,Symplekin_C|PF12295.4|4.5e-64,DUF3453|PF11935.4|1.1e-47 S_Transcript_51391:344-4318(+)
MADNSTREQALSLLATANNHGDLAVKLSSLRQVKDILSSSFSSTEKHQQQLQQPIASDVFPFLVELQSSPECLVRKFLLEVIEEIGLRVLDHSSMLMPVLLALVKDEDHAVARQSIVCGTKFLCAIVEEMAWQFHHHGKVDRWAEEIWIQMIEFKDVVCSLVFDPVSMGTRLLAFKFLETCILMFTPDTSESDRPTFGGNERRFNVSWLTSGHPTLDPTKLKSEANMLLTNLLDMLQSSSSLPGPVTIAIVNCLATIARKRPDHYGKVLSALLDFHSNLEMTQEGHMASLQYSVRSALLGFLRCTHPVISESRDRLVRLLRSMNAGDAADQALRQVDKIMRNNERLSRDARVKEDQPSSQQLLSGESMKRRLVPSEIEDPINGPEMASKRMRFTSNGKSSDLVQMNESGDDKHTLNGISSKVPMLNCNLNPVEQMIAVIGALLAEGERGAESLELLISQIHPDLLADIVITNMKHLPKTPPLAKPGSLPLNAQPQYTSVATVVKAAALETPTLPVESSVPTSQGSITATNVSKSLPDISNSTNPPADSRRDPRRDPRRLDPRRVATPVEAQLLPTPEEITNVQPGLECPASVNKSLSLPAVPSTEQLWPQSMPASEVEGRLLKIEQGTQQEELADGVRELSSSSEVKVSVEHTISPGADVDESFMVPLSLDIPLTNATDASSAEEFDDYSPAVSNISASEETSQELPQVPSYIDLSQYQTQSVRKLAVERIVKSYKHLKNKDLCQTRMALLARLVTWMDADEFLAMMVQEDMVLDYRDQQGHELVMHILYHLDCLRTVESSDQSPRTADLYEKFLIGVAKSLLDTLPASDKSFSRLLGEAPTLTDSIMRLLENLCCPDGSDQRGKDNRDDRVTQGLGVVWSLILGRPLNRQACLNIALKCAAHSEDDTRAKAIRLVANKLYPLKYVSETIEQYATNMLLTAVNSTAEADASQCGSSDPRRDQVGFEETSVSGSQHSESVSVSLPEAQRLISLYFALCTKKPGLLQLVFNVYARSGRSVKQAIHRHIPILLRTLGSAYSELLRIISDPPLGSENLLMLVLQVLAEQTTPSPDLITTVKHLYETKLKDATVLIPMLSSLSKDEVLPIFPRLVDLPLDKFQQALAHILQGSAHTGPALTPAEVLVAIHDIVPEKEGIALKKVTDACSACFEQRTVFTQHVLAKALNQMVDRTPLPLLFMRTVIQAIDAFPTLVDFVMEVLSKLVSRQIWKMPKLWVGFMKCVSQTQPHSFCVLLQLPAPQLESALNKYTSLRGPLAAYSSQSSIKSSLPRSTLSVLGLANESHLTPPHVASPMHTSDTSSVRGATPT*

Click here to download the sequence:
Link to NCBI Protein BLAST