Transcript Information: S_Transcript_51431.p1


Annotated TAIR IDAT4G34110.1
Annotated Gene Namepoly(A) binding protein 2
Annotated Gene Symbol(s)PAB2, PABP2, ATPAB2
Annotation TypeOrtholog
Chromosome Positionchr4:16336732-16339892 | Forward length=629
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1575.20931438931
Replicate 2608.05048020511
Replicate 3672.76263888962
Condition 2: 8 Hour
Replicate 1554.36172336707
Replicate 2551.4832780836
Replicate 3536.53628102323
Condition 3: 24 Hour
Replicate 1442.24126438881
Replicate 2477.50907621243
Replicate 3472.89393102331


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51431.p1 GENE.S_Transcript_51431~~S_Transcript_51431.p1 ORF type:complete len:650 (+),score=192.06,RRM_1|PF00076.18|1.5e-19,RRM_1|PF00076.18|2.1e-22,RRM_1|PF00076.18|8e-25,RRM_1|PF00076.18|2.2e-19,RRM_6|PF14259.2|4.5e-08,RRM_6|PF14259.2|1.1e-12,RRM_6|PF14259.2|8.4e-16,RRM_6|PF14259.2|5.8e-13,RRM_5|PF13893.2|0.00017,RRM_5|PF13893.2|1.5e-09,RRM_5|PF13893.2|3.2e-05,RRM_5|PF13893.2|6.2e-06,PABP|PF00658.14|1.3e+03,PABP|PF00658.14|2.4e-27,RRM_occluded|PF16842.1|12,RRM_occluded|PF16842.1|3.2,RRM_occluded|PF16842.1|0.0053,RRM_occluded|PF16842.1|0.25,RRM_occluded|PF16842.1|7.9e+03,RRM_3|PF08777.7|9.4e+02,RRM_3|PF08777.7|0.052,RRM_3|PF08777.7|1.7,RRM_3|PF08777.7|6.7,Nup35_RRM|PF05172.9|10,Nup35_RRM|PF05172.9|0.17,Nup35_RRM|PF05172.9|2.4e+03,Nup35_RRM|PF05172.9|19,Nup35_RRM_2|PF14605.2|4.8,Nup35_RRM_2|PF14605.2|4.9,Nup35_RRM_2|PF14605.2|5.7e+02,Nup35_RRM_2|PF14605.2|27 S_Transcript_51431:440-2389(+)
ATGGCTCAGGTTCAAGTTCAGTCTCAGGCTCCAGTTTCTGGACCTAATGGTGCAGCCCCAAACGCGGCATCTGGGGCTGGCGCTGGTGCGTTTGTGACGACTTCGTTGTACGTCGGTGACCTTGACTTTAACGTCAACGATTCTCAGCTTTACGATCTGTTCAACCAAATTGGTCAAGTTGTTTCGGTCCGGGTGTGCAGGGACTTGACTACCCGCCGGTCACTTGGCTATGGCTATGTCAACTACAACAACCCTCAGGATGCTGCTAGGGCTTTAGATGTGTTGAATTTCACTCCGCTCAATGGAAAGACTATCAGAATCATGTATTCACACCGTGATCCCAGTATCCGTAAAAGTGGGACCGGAAATATTTTCATTAAGAACTTGGACAAGGCCATTGACCACAAAGCTCTGCATGATACATTTTCTTCCTTTGGAAATATTCTTTCGTGCAAGATTGCCACTGACGGTAATGGCCAGTCTAAGGGATATGGTTTTGTCCAGTTTGATAATGAAGAATCTGCTCAAAAAGCCATTGAGAAGCTAAATGGTATGCTGATAAACGATAAACAAGTCTATGTTGGGCATTTTGTTCGCAAGCAGGAAAGAGACACTGTTCTGAACAGAACAAAATTCAACAATGTGTATGTGAAGAATCTTGCAGAATCAACTACAGATGAGGACTTGAAAAAGATCTTTGGTGAATATGGGAGTATCACAAGCGCTGTAGTGATGAGGGATGCAGATGGGAGATCAAAGTGTTTTGGATTTGTCAACTTTGAAAATGCAGATGATGCTGCTAATGCAGTTGAGGCATTGAATGGTAAGAAATTTGATGAGAAAGAGTGGTATGTGGGAAAGGCCCAAAAGAAATATGAAAGAGAGCAGGAACTTAAGGGAAAATTTGAGCAGAGCATGAAGGAAGCTGCTGACAAGTATCAGGGTGCAAATTTGTATATCAAGAACTTGGATGATACCATTGATGATGAAAAGCTCAAAGAGATGTTTTCTGAATTTGGCAAAATTACATCTTGCAAGGTTATGCTTGATCCTAGTGGGGTAAGCAAGGGCTCTGGTTTTGTGGCATTCTCCACCCCTGAAGAGGCTTCTAGAGCTCTTGCAGAGATGAATGGTAAAATAGTTGTCAGCAAGCCTTTGTATGTAGCTCTTGCACAGCGAAAAGAAGAAAGGAGGGCTCGCTTGCAGGCACAGTTTTCGCAAATGAGGCCCCTTGCAATGGCCCATTCTGTTGGACCTCGTATGCCAATGTACCCACCAGGTGCTCCAGGCCTTGGACATCAGGTGTTTTATGGACAACCACCACCTATGATTCCTCCACAAGCTGGATTTGGTTATCAGCAGCAGCTTGTCCCAGGAGTGAGGCCTGGAGGAGGACCAATGCCAAACTTCTTTGTGCCATTTATGCAGCAGGGACAAGGTCAGCGTCCAGGAGGGAGACGTGGTGCTGGTCCCATGCAACAAAATCAGCAGCCTGTGCCCATGATGCAGCAGCAGATGCTTCCTAGAGGACGTGTCTATCGCTACCCTCCTGGGCGAAACATGCCAGAGGTTCCAATACCTGGTGCTATGCTTCCTGGGTATGACATGGGTGGTGTGCCTATTCGTGATGCTGGAATGGCTCAGCCTGTGCCCATCACAGCTTTAGCTAGTGCTTTGGCAAATGCATCCCCAGAGCAGCAGAGGACAATGCTTGGAGAAAGCTTATATCCCCTGGTGGATGCAATTGAGCATGACAATGCTGCTAAAGTGACTGGTATGCTACTGGAGATGGACCAGCCTGAGGTTCTGCATCTGCTGGAATCACCAGATGCCTTAAAGGCCAAAGTTGCAGAGGCGATGGAAGTTCTGAGGAATGTCGCACAGCAGCAGGGGAACAATCCAGCTGATCAGCTTGCTTCATTGTCTCTTAACGAGAACCTAGTTTCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51431.p1 GENE.S_Transcript_51431~~S_Transcript_51431.p1 ORF type:complete len:650 (+),score=192.06,RRM_1|PF00076.18|1.5e-19,RRM_1|PF00076.18|2.1e-22,RRM_1|PF00076.18|8e-25,RRM_1|PF00076.18|2.2e-19,RRM_6|PF14259.2|4.5e-08,RRM_6|PF14259.2|1.1e-12,RRM_6|PF14259.2|8.4e-16,RRM_6|PF14259.2|5.8e-13,RRM_5|PF13893.2|0.00017,RRM_5|PF13893.2|1.5e-09,RRM_5|PF13893.2|3.2e-05,RRM_5|PF13893.2|6.2e-06,PABP|PF00658.14|1.3e+03,PABP|PF00658.14|2.4e-27,RRM_occluded|PF16842.1|12,RRM_occluded|PF16842.1|3.2,RRM_occluded|PF16842.1|0.0053,RRM_occluded|PF16842.1|0.25,RRM_occluded|PF16842.1|7.9e+03,RRM_3|PF08777.7|9.4e+02,RRM_3|PF08777.7|0.052,RRM_3|PF08777.7|1.7,RRM_3|PF08777.7|6.7,Nup35_RRM|PF05172.9|10,Nup35_RRM|PF05172.9|0.17,Nup35_RRM|PF05172.9|2.4e+03,Nup35_RRM|PF05172.9|19,Nup35_RRM_2|PF14605.2|4.8,Nup35_RRM_2|PF14605.2|4.9,Nup35_RRM_2|PF14605.2|5.7e+02,Nup35_RRM_2|PF14605.2|27 S_Transcript_51431:440-2389(+)
MAQVQVQSQAPVSGPNGAAPNAASGAGAGAFVTTSLYVGDLDFNVNDSQLYDLFNQIGQVVSVRVCRDLTTRRSLGYGYVNYNNPQDAARALDVLNFTPLNGKTIRIMYSHRDPSIRKSGTGNIFIKNLDKAIDHKALHDTFSSFGNILSCKIATDGNGQSKGYGFVQFDNEESAQKAIEKLNGMLINDKQVYVGHFVRKQERDTVLNRTKFNNVYVKNLAESTTDEDLKKIFGEYGSITSAVVMRDADGRSKCFGFVNFENADDAANAVEALNGKKFDEKEWYVGKAQKKYEREQELKGKFEQSMKEAADKYQGANLYIKNLDDTIDDEKLKEMFSEFGKITSCKVMLDPSGVSKGSGFVAFSTPEEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQMRPLAMAHSVGPRMPMYPPGAPGLGHQVFYGQPPPMIPPQAGFGYQQQLVPGVRPGGGPMPNFFVPFMQQGQGQRPGGRRGAGPMQQNQQPVPMMQQQMLPRGRVYRYPPGRNMPEVPIPGAMLPGYDMGGVPIRDAGMAQPVPITALASALANASPEQQRTMLGESLYPLVDAIEHDNAAKVTGMLLEMDQPEVLHLLESPDALKAKVAEAMEVLRNVAQQQGNNPADQLASLSLNENLVS*

Click here to download the sequence:
Link to NCBI Protein BLAST