Transcript Information: S_Transcript_516336.p1


Annotated TAIR IDAT4G27010.2
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G72270.1); Has 312 Blast hits to 226 proteins in 103 species: Archae - 0; Bacteria - 2; Metazoa - 129; Fungi - 90; Plants - 83; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:13558943-13568296 | Forward length=2402
E-Value3E-12
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.42397094445059
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_516336.p1 GENE.S_Transcript_516336~~S_Transcript_516336.p1 ORF type:5prime_partial len:87 (-),score=9.39 S_Transcript_516336:2-262(-)
TCCTCACTCTGGTCCAAGATTTGCTACCCTCCTGAAGCTAATCCTGCCTGGCGATGGTCAACTTACCAACCATGGGCTGACCATACAAGGAAACGTACTGCTATGGAGAAATTAATTGAACTTCATGCATGTCAAAAACTTCTGGTGATAATCTCAGGACTTCTGACAAATAAACCATCTGATTATCATTTACTATCACCTCTAGAATTAGAGTCTTCCGGTTTATTTGAATGGGAAAGAACCAACCTTCTTAAGGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_516336.p1 GENE.S_Transcript_516336~~S_Transcript_516336.p1 ORF type:5prime_partial len:87 (-),score=9.39 S_Transcript_516336:2-262(-)
SSLWSKICYPPEANPAWRWSTYQPWADHTRKRTAMEKLIELHACQKLLVIISGLLTNKPSDYHLLSPLELESSGLFEWERTNLLKE*

Click here to download the sequence:
Link to NCBI Protein BLAST