Transcript Information: S_Transcript_5179.p1


Annotated TAIR IDAT3G10405.1
Annotated Gene Nameunknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen development; LOCATED IN: chloroplast; Has 44 Blast hits to 44 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:3233978-3235118 | Reverse length=212
E-Value9E-26
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 125.463056737364
Replicate 224.650400678458
Replicate 326.981039826008
Condition 2: 8 Hour
Replicate 131.329894416529
Replicate 232.729185972933
Replicate 327.50007499655
Condition 3: 24 Hour
Replicate 124.541782686964
Replicate 225.042112791149
Replicate 322.5752866589


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5179.p1 GENE.S_Transcript_5179~~S_Transcript_5179.p1 ORF type:complete len:162 (+),score=25.85 S_Transcript_5179:68-553(+)
ATGGCTATGGCCACTGCCACTACTTGGCATCAAATTTTTATCACTGGATTCACTTCAAAACTTCCATTTCCGCCCTCATTTCTGCTGACCCGTTTCTCAGTTCGCCCAGTTCGCCCAAACTCACATCTTTCCTCTTCCTCTTCCTTGTCACTGAGGAAAGTTCACCATCGTTTGAGAGTCTCCTCCGAAGAATACCCGAGCGAGGGAATTGAAGATTCGAAGTTTGTTCCTCTAAATCCTGAAGATCCAAGATATGGTCCCCCTGCCTTACTGCTTTTGGGATTCAAAGTGGAAGAGGCAGATAAGATACAGCAACTTTTGAAGGACTTAGATGGAGACTTCTTGAAGGTTATCTACTGCACTGAAGACCTGATTACTCGCTCGCTTTGGGATGCAGTGAACATTACACAAGAAAGTCTGGAAAATATTAAGTTGATAGGGGCTAAGATTACTTGCTTGGCATCGTCTGAAGCTCTGTATCAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5179.p1 GENE.S_Transcript_5179~~S_Transcript_5179.p1 ORF type:complete len:162 (+),score=25.85 S_Transcript_5179:68-553(+)
MAMATATTWHQIFITGFTSKLPFPPSFLLTRFSVRPVRPNSHLSSSSSLSLRKVHHRLRVSSEEYPSEGIEDSKFVPLNPEDPRYGPPALLLLGFKVEEADKIQQLLKDLDGDFLKVIYCTEDLITRSLWDAVNITQESLENIKLIGAKITCLASSEALYQ*

Click here to download the sequence:
Link to NCBI Protein BLAST