Transcript Information: S_Transcript_517939.p1


Annotated TAIR IDAT3G24255.1
Annotated Gene NameRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:8789471-8793208 | Forward length=746
E-Value2E-23
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.15215716936217
Replicate 30.063595641667588
Condition 2: 8 Hour
Replicate 10.29414331471908
Replicate 20.23143291696269
Replicate 30.073502922775798
Condition 3: 24 Hour
Replicate 10.075327184450325
Replicate 20.31260429760479
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_517939.p1 GENE.S_Transcript_517939~~S_Transcript_517939.p1 ORF type:5prime_partial len:290 (+),score=41.84,RVT_1|PF00078.23|2.5e-10,RVT_1|PF00078.23|2.7e+03,RVT_1|PF00078.23|4.5e+03 S_Transcript_517939:2-871(+)
CCTATTCTTTTTGTGCTGGCTATGGAATATCTTCATAGATGTATTGGGGAAATACAGGAGGATCCCGATTTCAATCATCATCCAAAATGCAAGAAAATTAAGATGGCTCATCTATGCTTTGCGGATGACTTGATGTTATTCTCTCGAGGGGACATGATATCAATTAAACTACTCTACCAGGCCTTTCAGAAGTTCTCCAAAGCCTCAGGTCTACAGGCTAATATGAGTAAGAGTAGTATCTACTGTGGTGGCATGCCTGGGGGAATAATTGAAGACATTACTAACTTCTTAGGTCTGCAAAGAGAGCAATTGCCTGTAAAGTATTTGGGGGTCCCACTATCTACCAAGAAAATTTCTGTTAATCAGTGTATGCCTATAGTGGAGAAGATGACAACAAGGATACACTCATGGACCTCTAGATTCCTTTCTCTGGCAGGTAGATTACAGCTTATCAGATCTGTTTCATTTGGAATTCAAGCATATTGGTCCCAAATTATATTGCTTCCTCGGAAAATAATTAAAATTATTGAGAGAATATGCTTGAATTATCTCTGGTCTAGTAAGGGGGAGGATAAGAAGAAGGCCAAAGTTGCTTGGAGGAACATTTGTACCCCAAAAGTGGATGGAGGCCAGAACCTGATGGATTTGAGAATATGGAATAAGGCTGCCCTAGGAAAGCTCTATCTTGCTGTTTTTATGAAGGAAAGATCCCTTATGGTTCAAGTGGATTCATGCCTATTACTTAAAAGAGAAGAATATCCAGGAGATAGCTATCCCACAGGCTCTCTCTTGGATGCTAAGGAAAATTTTGGAGAGCAGAGAGGTTATAAGTATTGTGTAGAATTCTACCCAGGGCAAGGAGAGCATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_517939.p1 GENE.S_Transcript_517939~~S_Transcript_517939.p1 ORF type:5prime_partial len:290 (+),score=41.84,RVT_1|PF00078.23|2.5e-10,RVT_1|PF00078.23|2.7e+03,RVT_1|PF00078.23|4.5e+03 S_Transcript_517939:2-871(+)
PILFVLAMEYLHRCIGEIQEDPDFNHHPKCKKIKMAHLCFADDLMLFSRGDMISIKLLYQAFQKFSKASGLQANMSKSSIYCGGMPGGIIEDITNFLGLQREQLPVKYLGVPLSTKKISVNQCMPIVEKMTTRIHSWTSRFLSLAGRLQLIRSVSFGIQAYWSQIILLPRKIIKIIERICLNYLWSSKGEDKKKAKVAWRNICTPKVDGGQNLMDLRIWNKAALGKLYLAVFMKERSLMVQVDSCLLLKREEYPGDSYPTGSLLDAKENFGEQRGYKYCVEFYPGQGEH*

Click here to download the sequence:
Link to NCBI Protein BLAST