Transcript Information: S_Transcript_518353.p1


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value2.2E-102
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.54312247418736
Replicate 20
Replicate 30.094095592263268
Condition 2: 8 Hour
Replicate 10.32640903546632
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.2573678000522


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_518353.p1 GENE.S_Transcript_518353~~S_Transcript_518353.p1 ORF type:3prime_partial len:196 (+),score=-2.25,Chloroa_b-bind|PF00504.17|6.8e-24 S_Transcript_518353:75-659(+)
ATGGCGGCGCTCGCCCCATCCAAGATGCTCGGCACCCGGCTCAACTTCGCCGTCTCCTCCCGCTACGCCACCGCGGCACCGACCACCGGAGCGCAGAAGATCGTCTCCCTCTTCAGCAAGAAGCCCGCCCCGAAGCCCAAGCCCGCCGCCGTCACCTCCTCGAGCCCCGACATCGGCGATGAGCTCGCCAAGTGGTACGGCCCTGACAGGAGGATCTTCTTGCCGGAGGGTCTCCTGGACCGCTCAGAGGTGCCGGAGTACCTCAACGGAGAGGTCCCCGGAGACTACGGCTACGACCCTTTTGGCCTCAGCAAGAAGCCAGAGGACTTCTCCAAGTACCAGGCCTATGAGCTGATCCATGCCAGGTGGGCGATGCTCGGCGCCGCCGGGTTCATCATCCCCGAGGCCTGCAACAAGTTTGGCGCAAACTGCGGCCCCGAGGCCGTCTGGTTCAAGACCGGCGCCCTCCTCCTGGACGGCAACACCCTCAACTACTTCGGCAACAGCATCCCCATCAACCTCATCGTCGCCGTCGCCGCCGAGGTCGTCCTCGTCGGCGGCGCCGAGTACTACCGGATCATCAAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_518353.p1 GENE.S_Transcript_518353~~S_Transcript_518353.p1 ORF type:3prime_partial len:196 (+),score=-2.25,Chloroa_b-bind|PF00504.17|6.8e-24 S_Transcript_518353:75-659(+)
MAALAPSKMLGTRLNFAVSSRYATAAPTTGAQKIVSLFSKKPAPKPKPAAVTSSSPDIGDELAKWYGPDRRIFLPEGLLDRSEVPEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNKFGANCGPEAVWFKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAEYYRIIN

Click here to download the sequence:
Link to NCBI Protein BLAST