Transcript Information: S_Transcript_51838.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value8E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.344737925597
Replicate 221.482189832317
Replicate 322.648974137755
Condition 2: 8 Hour
Replicate 13.1801020648356
Replicate 23.9248857262678
Replicate 33.9266035061808
Condition 3: 24 Hour
Replicate 119.162178500521
Replicate 224.453059858691
Replicate 322.567092362472


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51838.p1 GENE.S_Transcript_51838~~S_Transcript_51838.p1 ORF type:complete len:114 (+),score=16.28 S_Transcript_51838:1179-1520(+)
ATGTTTGTAGGGCAGGAAGATCCTTCGCAGGTGTTTGCTCTGGCCAGTATTTGGTTCCTGATCTTTGTGTTCGGCGGTTCTGTATGTCTTTTGCCCATCATGTACACTGTTTTTCTGGCTTATCAAGACATGTTTAACTTGGAAGCAGTCTACATCAGCCAATCATCGACAGTGGAGTCTCTTGCCATGCTAAATTGTGTGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGTTAAACAACTGAAGGGATTATGGAGGAATGATTTGGTGGCATTAAAGGGTGCGTGTCCAAACTGTGGGGAGGAGGTTAGTGTCTACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51838.p1 GENE.S_Transcript_51838~~S_Transcript_51838.p1 ORF type:complete len:114 (+),score=16.28 S_Transcript_51838:1179-1520(+)
MFVGQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTVFLAYQDMFNLEAVYISQSSTVESLAMLNCVLFMLLGSAIGCPIASASVKQLKGLWRNDLVALKGACPNCGEEVSVY*

Click here to download the sequence:
Link to NCBI Protein BLAST