Transcript Information: S_Transcript_51839.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value7E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.07648795546
Replicate 216.686143362826
Replicate 312.785930478126
Condition 2: 8 Hour
Replicate 12.2400620081022
Replicate 23.2899777411363
Replicate 33.6720577806901
Condition 3: 24 Hour
Replicate 111.932079217551
Replicate 213.903010462801
Replicate 312.18712229659


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51839.p1 GENE.S_Transcript_51839~~S_Transcript_51839.p1 ORF type:complete len:238 (+),score=19.92 S_Transcript_51839:199-912(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATATCCACCCATAGCCACCGCCCGCACGTGCTTTCCACGTGCTTCTGCTCCAAAACCTCGTCTCCGGTTGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTACCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTTGAGTTGAAATTGAAATGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTAAGGCGGCAATCCACCTATGCTGATGCCCAGGAAGATCCTTCGCAGGTGTTTGCTCTGGCCAGTATTTGGTTCCTGATCTTTGTGTTCGGCGGTTCTGTATGTCTTTTGCCCATCATGTACACTGTTTTTCTGGCTTATCAAGACATGTTTAACTTGGAAGCAGTCTACATCAGCCAATCATCGACAGTGGAGTCTCTTGCCATGCTAAATTGTGTGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCAATTGCATCAGCTTCTGGTAATGTGCCTTGCCATCCTTTTCTTCTTGTTTGGCTCCATATCTTGGACCAATGCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51839.p1 GENE.S_Transcript_51839~~S_Transcript_51839.p1 ORF type:complete len:238 (+),score=19.92 S_Transcript_51839:199-912(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPFTFRISTHSHRPHVLSTCFCSKTSSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLKWYGSKYVVKYPRCSLRRQSTYADAQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTVFLAYQDMFNLEAVYISQSSTVESLAMLNCVLFMLLGSAIGCPIASASGNVPCHPFLLVWLHILDQC*

Click here to download the sequence:
Link to NCBI Protein BLAST