Transcript Information: S_Transcript_51841.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value6E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.816897276235
Replicate 214.091717201251
Replicate 313.564334926003
Condition 2: 8 Hour
Replicate 16.053659186799
Replicate 28.6600704411845
Replicate 37.4261662623806
Condition 3: 24 Hour
Replicate 110.851974379198
Replicate 213.744505085011
Replicate 39.6006491606571


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51841.p1 GENE.S_Transcript_51841~~S_Transcript_51841.p1 ORF type:5prime_partial len:155 (+),score=6.78 S_Transcript_51841:3-467(+)
GCTGGAGCTGGTACCTCTCTCACTCCACCACCTCGCCTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATAACCCCCCACAGCCACCGCTCGCACTTGCTTTCCACGTGCTTCAGCTCCAAAACCCCGTCTCCGGTCGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTACCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTTGAGTTGAAATTGAAATGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTAAGGCGGCAATCCACCTATGCTGATGCCCAGGTGATACTCTTTGCTCCTTGCTCTTCCTTTTCATTATTTGAGTGTCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51841.p1 GENE.S_Transcript_51841~~S_Transcript_51841.p1 ORF type:5prime_partial len:155 (+),score=6.78 S_Transcript_51841:3-467(+)
AGAGTSLTPPPRLIGPSKSTAIKFIRPNFTTGAPFTFRITPHSHRSHLLSTCFSSKTPSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLKWYGSKYVVKYPRCSLRRQSTYADAQVILFAPCSSFSLFECL*

Click here to download the sequence:
Link to NCBI Protein BLAST