Transcript Information: S_Transcript_51842.p2


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value1E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.60053899995
Replicate 210.60711036419
Replicate 316.196505406752
Condition 2: 8 Hour
Replicate 14.9212439193384
Replicate 22.2945485784335
Replicate 33.0060810724974
Condition 3: 24 Hour
Replicate 117.223850444507
Replicate 214.818646030689
Replicate 314.227819920835


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51842.p2 GENE.S_Transcript_51842~~S_Transcript_51842.p2 ORF type:complete len:156 (+),score=8.51 S_Transcript_51842:199-666(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATATCCACCCATAGCCACCGCCCGCACGTGCTTTCCACGTGCTTCTGCTCCAAAACCTCGTCTCCGGTTGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTACCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTTGAGTTGAAATTGAAATGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTAAGGCGGCAATCCACCTATGCTGATGCCCAGGTGATACTCTTTGCTCCTTGCTCTTCCTTTTCATTATTTGAGTGTCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51842.p2 GENE.S_Transcript_51842~~S_Transcript_51842.p2 ORF type:complete len:156 (+),score=8.51 S_Transcript_51842:199-666(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPFTFRISTHSHRPHVLSTCFCSKTSSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLKWYGSKYVVKYPRCSLRRQSTYADAQVILFAPCSSFSLFECL*

Click here to download the sequence:
Link to NCBI Protein BLAST