Transcript Information: S_Transcript_51844.p1


Annotated TAIR IDAT5G59400.2
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23957756-23959518 | Forward length=301
E-Value1.2E-105
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.836824847338
Replicate 226.269004832868
Replicate 320.698322511091
Condition 2: 8 Hour
Replicate 16.903903340079
Replicate 27.4036333627872
Replicate 39.124409586305
Condition 3: 24 Hour
Replicate 121.29483246745
Replicate 223.071434086713
Replicate 322.046607159868


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51844.p1 GENE.S_Transcript_51844~~S_Transcript_51844.p1 ORF type:3prime_partial len:278 (+),score=26.25 S_Transcript_51844:199-1029(+)
ATGGCTGGAGCTGGTACCTCTCTCTCTCCACCACCTCGCTTTATCGGACCCTCCAAATCCACCGCCATCAAGTTTATCCGACCCAACTTCACAACCGGAGCTCCGTTCACTTTCCGAATAACCCCCCACAGCCACCGCTCGCACTTGCTTTCCACGTGCTTCAGCTCCAAAACCCCGTCTCCGGTCGTCTCCGAGGGCCCGTCTTGTATTTTTGTGGGCCCCATCGAAACCGCTAGCCAAGAAACCCTTGAGGCTCTCTACCGCCAAGCGAGAGATGCGTATTACAGTGGGACTCCTTTGATAGTTGATGATATGTTTGATCGTGTCGAGTTGAAATTGAGGTGGTATGGGTCGAAATACGTGGTCAAGTATCCAAGGTGTAGTTTTAGGCGGCAGTCCACCTATGCTGATGCCCAGGAAGATCCTTCGCAGGTGTTTGCTCTGGCCAGTATTTGGTTCCTGATCTTTGTGTTCGGCGGTTCTGTATGTCTTTTGCCCATCATGTACACTGTTTTTCTGGCTTATCAAGACATGTTTAACTTGGAAGCAGTCTACATCAGCCAATCATCGACAGTGGAGTCTCTTGCCATGCTAAATTGTGTGCTGTTCATGCTGCTGGGTTCTGCCATAGGTTGTCCGATTGCATCAGCTTCTGTTAAACAACTGAAGGGATTATGGAGGAATGATTTGGTGGCATTAAAGGGTGCGTGTCCAAACTGTGGGGAGGAGGTTTTCGCATTTGTGAAGCCAAACCAGAGCAATAATAGCTCTCCCCATAGAGCAGATTGCCATGTATGTGATTGCCTCCTAGAATTTAGGACCAAAGCTGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51844.p1 GENE.S_Transcript_51844~~S_Transcript_51844.p1 ORF type:3prime_partial len:278 (+),score=26.25 S_Transcript_51844:199-1029(+)
MAGAGTSLSPPPRFIGPSKSTAIKFIRPNFTTGAPFTFRITPHSHRSHLLSTCFSSKTPSPVVSEGPSCIFVGPIETASQETLEALYRQARDAYYSGTPLIVDDMFDRVELKLRWYGSKYVVKYPRCSFRRQSTYADAQEDPSQVFALASIWFLIFVFGGSVCLLPIMYTVFLAYQDMFNLEAVYISQSSTVESLAMLNCVLFMLLGSAIGCPIASASVKQLKGLWRNDLVALKGACPNCGEEVFAFVKPNQSNNSSPHRADCHVCDCLLEFRTKAE

Click here to download the sequence:
Link to NCBI Protein BLAST