Transcript Information: S_Transcript_518963.p1


Annotated TAIR IDAT5G63520.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: F-box domain, Skp2-like (InterPro:IPR022364), FIST C domain (InterPro:IPR019494), FIST domain, N-terminal (InterPro:IPR013702); Has 137 Blast hits to 137 proteins in 56 species: Archae - 0; Bacteria - 88; Metazoa - 6; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:25426300-25429093 | Reverse length=519
E-Value5E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.15563158617065
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.12470988489552
Replicate 20.13082952420893
Replicate 30.12465407956129
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_518963.p1 GENE.S_Transcript_518963~~S_Transcript_518963.p1 ORF type:3prime_partial len:171 (+),score=29.35 S_Transcript_518963:43-552(+)
ATGGCTCCAAGGAAGAGTAAGGCTGGCCCAAAGAAGCCAACAAAAAATTTCCATGGTTTTGACAAAATTGGAGATGGAATTCTGGTAGAGATCCTCTCTAAACTCCCAGCAAAGCCATTTGCTTTTGCAGCTTGCGTTTCGCGCTCTTTCAATCGAGCTAGCAGATTGATCTTGGCAAAGCCAAGGCTTGTTTCTGCTTTGTCTATGGAACAAGATCCTGAAATTGCTATCGAAGAAGCTCTAAAGGAAGTTCTTTCAAAGCCTATTAGACCCCAATTTGTGCTTGCATCATTCACCTTGAAATTCAACTTGGATACAGTCCATAGCTATATGGAACAAAGTTTTGGCTCAAAAATTCCTATCATTACTAACTTGGTTGAGGGCGTCATGGGTGTAGAGGCACAATCTCATGAGTTTACTGAGGTAACGGCAAACGATGTAGAAAGTTCGGAAACCGAAAATACGGACGATGTAATTCTTGGGCTAGTGTTAATTGTTGGTTGGTTCCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_518963.p1 GENE.S_Transcript_518963~~S_Transcript_518963.p1 ORF type:3prime_partial len:171 (+),score=29.35 S_Transcript_518963:43-552(+)
MAPRKSKAGPKKPTKNFHGFDKIGDGILVEILSKLPAKPFAFAACVSRSFNRASRLILAKPRLVSALSMEQDPEIAIEEALKEVLSKPIRPQFVLASFTLKFNLDTVHSYMEQSFGSKIPIITNLVEGVMGVEAQSHEFTEVTANDVESSETENTDDVILGLVLIVGWFP

Click here to download the sequence:
Link to NCBI Protein BLAST