Transcript Information: S_Transcript_51916.p1


Annotated TAIR IDAT5G04170.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1145579-1147519 | Forward length=354
E-Value1.1E-115
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 149.928816476622
Replicate 247.054267994346
Replicate 338.68078275941
Condition 2: 8 Hour
Replicate 181.904596439254
Replicate 284.537870523569
Replicate 382.150899397959
Condition 3: 24 Hour
Replicate 145.042989852287
Replicate 247.73439960328
Replicate 344.752388524122


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_51916.p1 GENE.S_Transcript_51916~~S_Transcript_51916.p1 ORF type:5prime_partial len:226 (-),score=12.86,EF-hand_1|PF00036.28|0.00021,EF-hand_1|PF00036.28|2.6e+02,EF-hand_1|PF00036.28|3.1e-06,EF-hand_1|PF00036.28|4.9e+03,EF-hand_1|PF00036.28|2.8e+03,EF-hand_6|PF13405.2|0.00053,EF-hand_6|PF13405.2|1.4e+03,EF-hand_6|PF13405.2|2.9e-06,EF-hand_6|PF13405.2|6.3e+03,EF-hand_6|PF13405.2|3.7e+03,EF-hand_5|PF13202.2|0.0003,EF-hand_5|PF13202.2|5.1e-05,EF-hand_7|PF13499.2|0.0019,EF-hand_7|PF13499.2|2.2e-05,EF-hand_8|PF13833.2|0.71,EF-hand_8|PF13833.2|3.2e+02,EF-hand_8|PF13833.2|0.31,EF-hand_8|PF13833.2|0.61 S_Transcript_51916:228-905(-)
GCATACGCGCACCCCCCACCAGGCGCGTCAGCATACGCGCACCCCCCACCAGGCGCGTCAGCATACGCGCACCCCCCACCAGACGCGTCGTCGGGGTACCCGTCGTATGCCGGGTCGGGTAGCCCGTTTTCGAGCTTGTTGCCGTCGACGTTCCCGCCGGGTACAGACCCGAATGTGGTGGCGTGTTTCCAGGTGGCGGACCAGGATGGGAGTGGGTTGATTGATGATAAGGAGCTTCAAAGAGCTTTGTCTTCTTATAATCAGAGCTTTAGCCTTCGCACTGTTCATCTCCTCATGTTCAATTTCACCAACTCCAATTCTCGCAAGATCGGTCCTAAGGAGTTTACATCTCTGTTCTACAGTCTGCAATCCTGGAGGGGAATATTCGAGAGATTTGATAGAGACAGGAGTGGCAAGATAGATGCTGCAGAGCTGCGTGATGCATTGTATAACCTTGGATTTGCCGTCTCTCCTGCAATTTTGGATTTGCTTGTCTCCAAGTTTGATAAGACTGGGGGGAAGAGTAGGGCTATCGAATATGATAACTTCATCGAGTGCTGCCTTACAGTAAAGGGTCTGACAGAGAAATTCAAGGAGAAGGACAAGGCGTACACTGGCACCGCAACCTTTACTTATGAGGAGTTCATGCTCACAGTCTTACCCTTTCTTATCGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_51916.p1 GENE.S_Transcript_51916~~S_Transcript_51916.p1 ORF type:5prime_partial len:226 (-),score=12.86,EF-hand_1|PF00036.28|0.00021,EF-hand_1|PF00036.28|2.6e+02,EF-hand_1|PF00036.28|3.1e-06,EF-hand_1|PF00036.28|4.9e+03,EF-hand_1|PF00036.28|2.8e+03,EF-hand_6|PF13405.2|0.00053,EF-hand_6|PF13405.2|1.4e+03,EF-hand_6|PF13405.2|2.9e-06,EF-hand_6|PF13405.2|6.3e+03,EF-hand_6|PF13405.2|3.7e+03,EF-hand_5|PF13202.2|0.0003,EF-hand_5|PF13202.2|5.1e-05,EF-hand_7|PF13499.2|0.0019,EF-hand_7|PF13499.2|2.2e-05,EF-hand_8|PF13833.2|0.71,EF-hand_8|PF13833.2|3.2e+02,EF-hand_8|PF13833.2|0.31,EF-hand_8|PF13833.2|0.61 S_Transcript_51916:228-905(-)
AYAHPPPGASAYAHPPPGASAYAHPPPDASSGYPSYAGSGSPFSSLLPSTFPPGTDPNVVACFQVADQDGSGLIDDKELQRALSSYNQSFSLRTVHLLMFNFTNSNSRKIGPKEFTSLFYSLQSWRGIFERFDRDRSGKIDAAELRDALYNLGFAVSPAILDLLVSKFDKTGGKSRAIEYDNFIECCLTVKGLTEKFKEKDKAYTGTATFTYEEFMLTVLPFLIA*

Click here to download the sequence:
Link to NCBI Protein BLAST