Transcript Information: S_Transcript_519792.p1


Annotated TAIR IDAT5G06860.1
Annotated Gene Namepolygalacturonase inhibiting protein 1
Annotated Gene Symbol(s)PGIP1, ATPGIP1
Annotation TypeHomolog
Chromosome Positionchr5:2132373-2133434 | Forward length=330
E-Value5E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.21362242567877
Condition 2: 8 Hour
Replicate 10.16467482870373
Replicate 20.086377793975778
Replicate 30.082300569903403
Condition 3: 24 Hour
Replicate 10.16868635900073
Replicate 20.35002025600537
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_519792.p1 GENE.S_Transcript_519792~~S_Transcript_519792.p1 ORF type:internal len:259 (+),score=5.00,LRR_8|PF13855.2|1.6e-09,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|1.6e-05,LRR_8|PF13855.2|11,LRR_8|PF13855.2|1.4,LRR_4|PF12799.3|3.4e+02,LRR_4|PF12799.3|3e-07,LRR_4|PF12799.3|23,LRR_4|PF12799.3|0.012,LRR_4|PF12799.3|3.2e+02,LRR_4|PF12799.3|66,LRR_4|PF12799.3|82,LRR_1|PF00560.29|23,LRR_1|PF00560.29|0.0041,LRR_1|PF00560.29|13,LRR_1|PF00560.29|33,LRR_1|PF00560.29|3e+03,LRR_1|PF00560.29|0.9,LRR_1|PF00560.29|3.6e+02,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|5.1e+03 S_Transcript_519792:2-775(+)
TTAATCAACCTAAAGTCCTTGTCTATTGTAAGAAGCAACCTTCATGGTTCAATCCCGGATTGTTTAGGCCAGCTTCGAAATCTAAACTACCTCGATCTCTCATACAACAGCCTTACTGGCGAAATCCCACCTAGCCTCAGCAATCTCCCTAACCTCCAGATTCTTAACCTCTATAAGAACCAGCTGTACGGAACCATACCTGATTTTTCAGGTGCAAGTGCAGGACTGTACTCTCTTAGTCTTGGCTACAACAGCTTTTCTGGCGCAATCCCGGACCACCTTGGTCTCCTCTCTAGCCTCAGCACTCTCATCCTTGCAGCGAACCAGTTCAACGGCTCAATCCCTTCGTTTTTGGGACATATGGACAACCTCTTATGGCTAGATCTCTCTTCGAATCAGCTCACCGGCTCAATCCCGGAGAGTTTAGGCCAGTTAGTGAAGCCCAACAGCTTAGCTTTAACACTTCTATTACAGAACAATCAGCTGTCAGGTACAGTCCCAGAGTCGCTCGGGCAGCTCATCTTTTTTGAACTAAATCTGTCCAACAATAAACTTAAGGGAGATGCAATCTTTTTGTTTGGAAGCAACCAAACTCGGGGTCGAACAATTGATATTAGCAAAAACCATTTCAGGTTCAATTTCTCGGAGTCGAATCCTCCTCAGGGGTTGTTGAATCTCAACATAAGCCATAACAAGATATATGGGTCCTTCCCGATTACCTTAGGCCGGGTGCCATATTTTGAGTCGTTTGATGTGAGTTATAATAAGCTCAGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_519792.p1 GENE.S_Transcript_519792~~S_Transcript_519792.p1 ORF type:internal len:259 (+),score=5.00,LRR_8|PF13855.2|1.6e-09,LRR_8|PF13855.2|0.048,LRR_8|PF13855.2|1.6e-05,LRR_8|PF13855.2|11,LRR_8|PF13855.2|1.4,LRR_4|PF12799.3|3.4e+02,LRR_4|PF12799.3|3e-07,LRR_4|PF12799.3|23,LRR_4|PF12799.3|0.012,LRR_4|PF12799.3|3.2e+02,LRR_4|PF12799.3|66,LRR_4|PF12799.3|82,LRR_1|PF00560.29|23,LRR_1|PF00560.29|0.0041,LRR_1|PF00560.29|13,LRR_1|PF00560.29|33,LRR_1|PF00560.29|3e+03,LRR_1|PF00560.29|0.9,LRR_1|PF00560.29|3.6e+02,LRR_1|PF00560.29|1.8e+03,LRR_1|PF00560.29|5.1e+03 S_Transcript_519792:2-775(+)
LINLKSLSIVRSNLHGSIPDCLGQLRNLNYLDLSYNSLTGEIPPSLSNLPNLQILNLYKNQLYGTIPDFSGASAGLYSLSLGYNSFSGAIPDHLGLLSSLSTLILAANQFNGSIPSFLGHMDNLLWLDLSSNQLTGSIPESLGQLVKPNSLALTLLLQNNQLSGTVPESLGQLIFFELNLSNNKLKGDAIFLFGSNQTRGRTIDISKNHFRFNFSESNPPQGLLNLNISHNKIYGSFPITLGRVPYFESFDVSYNKLS

Click here to download the sequence:
Link to NCBI Protein BLAST