Transcript Information: S_Transcript_52042.p1


Annotated TAIR IDAT5G55300.2
Annotated Gene NameDNA topoisomerase I alpha
Annotated Gene Symbol(s)TOP1ALPHA
Annotation TypeOrtholog
Chromosome Positionchr5:22424701-22429045 | Reverse length=933
E-Value1.6E-143
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8742069611167
Replicate 26.7572381301614
Replicate 35.648513265457
Condition 2: 8 Hour
Replicate 17.7904562413143
Replicate 27.4297652309055
Replicate 37.2363763087022
Condition 3: 24 Hour
Replicate 18.3026678949491
Replicate 25.6868604693418
Replicate 36.5149192190337


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52042.p1 GENE.S_Transcript_52042~~S_Transcript_52042.p1 ORF type:internal len:271 (-),score=56.32,Topoisom_I_N|PF02919.11|2.5e-63,Topoisom_I_N|PF02919.11|3e+03,Topoisom_I|PF01028.16|4.1e+03,Topoisom_I|PF01028.16|1.3e-35 S_Transcript_52042:3-812(-)
GGGAAGAACCATGTTATTCAGGACCTTTCAAAGTGTGATTTTACGCCAATTTACGAATGGCATCAGAGGGAGAAGGAGAAAAAGAAGCAAATGAGCACTGAGGAGAAGAAGGCATTGAAAGAAGAGAAAATGAAACAAGAAGAGAAGTATATGTGGGCTATTGTTGATGGTGTCAAAGAAAAGGTGGGGAACTTCAGAGTTGAGCCTCCTGGATTATTCAGGGGTCGTGGCGAGCATCCAAAGATGGGAATGCTCAAAAATCGTATATATCCAAGTGACATTACAATAAATATAGGGAAGGGTGCTCCAATTCCAGAATGTCCAATCCCTGGTCAGAGCTGGAAAGAAGTGAGGCACGACAACACTGTCACATGGTTGGCGTTTTGGAATGACCCCATCAACTCAAAAGAGTTCAAATATGTATTCCTGGCTGCTAGCAGTTCATTAAAGGGCCAAAGTGACAAAGAAAAGTATGAGAAAGCAAGGAAGTTGAAGGATTATATTCAAGGTATTAGAAAAGCATACACCAGGGACTTTACTAGTAAAGATAAGACCAAACAACAAATTGCTGTTGCGACGTATCTCATTGATAGACTTGCACTTAGGGCGGGTAATGAGAAGGATGAAGAAGAAGCAGACACTGTTGGTTGCTGTACATTGAAAGTAGAGAACGTAAAACCAATACCACCAAATATATTGGAGGTCAAGTCTGTTTTTACGATTTTACTGTTAATGCTAGGGTCAATTTCAATTTTGTTAATCTTCTCCTCTCACTCACTCAACTTAAATAGATTGCTTCAATCTTGGGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52042.p1 GENE.S_Transcript_52042~~S_Transcript_52042.p1 ORF type:internal len:271 (-),score=56.32,Topoisom_I_N|PF02919.11|2.5e-63,Topoisom_I_N|PF02919.11|3e+03,Topoisom_I|PF01028.16|4.1e+03,Topoisom_I|PF01028.16|1.3e-35 S_Transcript_52042:3-812(-)
GKNHVIQDLSKCDFTPIYEWHQREKEKKKQMSTEEKKALKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGMLKNRIYPSDITINIGKGAPIPECPIPGQSWKEVRHDNTVTWLAFWNDPINSKEFKYVFLAASSSLKGQSDKEKYEKARKLKDYIQGIRKAYTRDFTSKDKTKQQIAVATYLIDRLALRAGNEKDEEEADTVGCCTLKVENVKPIPPNILEVKSVFTILLLMLGSISILLIFSSHSLNLNRLLQSWV

Click here to download the sequence:
Link to NCBI Protein BLAST