Transcript Information: S_Transcript_52484.p2


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value1E-145
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6535391224995
Replicate 27.7162605965401
Replicate 36.5935170454323
Condition 2: 8 Hour
Replicate 17.2373733977835
Replicate 26.1435646523602
Replicate 37.3445796151879
Condition 3: 24 Hour
Replicate 15.1499595793888
Replicate 25.3430229363928
Replicate 36.7955767309121


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52484.p2 GENE.S_Transcript_52484~~S_Transcript_52484.p2 ORF type:complete len:386 (+),score=65.73,NPC1_N|PF16414.1|6.4e-65 S_Transcript_52484:525-1682(+)
ATGGCGTTTCGTTTAGGGCTTCTTCTCTTCACCCTTTTCTCTCTCCAGGTCTTATTCATAACTTCAGTAGCTGATGCAGCAAGATCTAATTCACGTTTTCTTTTGACACCTAATACCACATCTGGGGTTAGGCATGCACCTGGATATTGTGCAATGTATGACATATGTGGTGCACGAAGTGACGGGAAAGTCTTGAATTGCCCTTTAAATACACCTGCTGTTAAGCCTGATGCTCTGTTCTCATCTAAAATTCAAAGCTTGTGCCCCACAATTACGGGCGATGTTTGTTGTACAGAAGACCAATTTGAGACCCTGCGGAGCCAAGTCCAGCAAGCAGTTCCTTTTCTTGTGGGCTGTCCGGCATGCTTAAGGAATTTTTTGAATCTCTTTTGCGAGATGTCCTGCTCCCCCAACCAGAGTTTATTCATCAATGTGACTTCTGTGAAAAAGGTTAATAACAATTTGACCGTGGATGCAATTGAATTTTATATAACTGACACTTTTGGTGAAGGGTTGTACAACTCTTGCAAGGATGTGAAGTTTGGCACTATGAATACTCGAGCCATAGAATTTGTTGCTGGTGGTGCCCAAGATTTCAAAGGGTGGTATTCTTTCATTGGTAGACAAGTGGGCCTTAATGTCCCCGGTTCACCCTATGCTATAAATTTCACCTCAAGTGTGCCTGAAACGTCAGGGATGAGTCCCATGAATGATACTGCTTACTCATGCGGTGACAATTTGTTGGGTTGCTCTTGTGGCGACTGTCCTTCATCTCCCACATGCTCTAGTTCAGCTGCTCCTTCAGTTACTAAGGGCAGGACCTGTTCAATAAAAATGGGTTCTCTAAAGGCAAAATGCTCTGATGTTGCTCTAGCGATTGTGTATATTGCTTTGGTTTCCGTGTTACTTGGATGGGGTTTCGTTCATCGGAGGAATGAAATGAGCCCAGTTTCAAGAACAGAACCACTGAAGAATGCCACGAGTACTGGTGGAATGCATTCAGTGGACACAAAAGATGGGGACCTTCCCTTGCCAGCATCTGCCTTGCTTGCCTACTGGTTGAGGGGAGCTTCTGGAAACCATGATATGCATATTCTCCTTCTATGCAATTTTGAACATCCTCAAATCCAAGGGGAAGCACAACTTACTATTCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52484.p2 GENE.S_Transcript_52484~~S_Transcript_52484.p2 ORF type:complete len:386 (+),score=65.73,NPC1_N|PF16414.1|6.4e-65 S_Transcript_52484:525-1682(+)
MAFRLGLLLFTLFSLQVLFITSVADAARSNSRFLLTPNTTSGVRHAPGYCAMYDICGARSDGKVLNCPLNTPAVKPDALFSSKIQSLCPTITGDVCCTEDQFETLRSQVQQAVPFLVGCPACLRNFLNLFCEMSCSPNQSLFINVTSVKKVNNNLTVDAIEFYITDTFGEGLYNSCKDVKFGTMNTRAIEFVAGGAQDFKGWYSFIGRQVGLNVPGSPYAINFTSSVPETSGMSPMNDTAYSCGDNLLGCSCGDCPSSPTCSSSAAPSVTKGRTCSIKMGSLKAKCSDVALAIVYIALVSVLLGWGFVHRRNEMSPVSRTEPLKNATSTGGMHSVDTKDGDLPLPASALLAYWLRGASGNHDMHILLLCNFEHPQIQGEAQLTIL*

Click here to download the sequence:
Link to NCBI Protein BLAST