Transcript Information: S_Transcript_52489.p1


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.046572240564
Replicate 228.789458522684
Replicate 328.815880894004
Condition 2: 8 Hour
Replicate 131.36768040441
Replicate 229.331593639362
Replicate 326.491844734818
Condition 3: 24 Hour
Replicate 126.2511439309
Replicate 223.120955952596
Replicate 320.956407725275


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52489.p1 GENE.S_Transcript_52489~~S_Transcript_52489.p1 ORF type:complete len:1289 (+),score=229.91,Patched|PF02460.14|3.5e-57,Patched|PF02460.14|2.9e-33,NPC1_N|PF16414.1|7.8e-64,Sterol-sensing|PF12349.4|5.4e+03,Sterol-sensing|PF12349.4|1.6e-49,Sterol-sensing|PF12349.4|2.7e+03,Sterol-sensing|PF12349.4|36 S_Transcript_52489:536-4402(+)
ATGGCGTTTCGTTTAGGCCTTCTTCACTTCACCCTTTTCTCCCTCCAGGTCTTATTTACAACATCAGTAGCTGATGCAGCAAGATCTAATTCACGTTTTCTTTTGACACCTAATACCACATCTGGGGTTAGGCATGCACCTGGATATTGTGCAATGTATGACATATGTGGTGCACGAAGTGACGGGAAAGTCTTGAATTGCCCTTTAAATACACCTGCTGTTAAGCCTGATGCTCTGTTCTCATCTAAAATTCAAAGCTTGTGCCCCACAATTACGGGCGATGTTTGTTGTACAGAAGACCAATTTGAGACCCTGCGGAGCCAAGTCCAGCAAGCAGTTCCTTTTCTTGTGGGCTGTCCGGCATGCTTAAGGAATTTTTTGAATCTCTTTTGCGAGATGTCCTGCTCCCCCAACCAGAGTTTATTCATCAATGTGACTTCTGTGAAAAAGGTTAATAACAATTTGACCGTGGATGCAATTGAATTTTATATAACTGACACTTTTGGTGAAGGGTTGTACAACTCTTGCAAGGATGTGAAGTTTGGCACTATGAATACTCGAGCCATAGAATTTGTTGCTGGTGGTGCCCAAGATTTCAAAGGGTGGTATTCTTTCATTGGTAGACAAGTGGGCCTTAATGTCCCCGGTTCACCCTATGCTATAAATTTCACCTCAAGTGTGCCTGAAACGTCAGGGATGAGTCCCATGAATGATACTGCTTACTCATGCGGTGACAATTTGTTGGGTTGCTCTTGTGGCGACTGTCCTTCATCTCCCACATGCTCTAGTTCAGCTGCTCCTTCAGTTACTAAGGGCAGGACCTGTTCAATAAAAATGGGTTCTCTAAAGGCAAAATGCTCTGATGTTGCTCTAGCGATTGTGTATATTGTTTTGGTTTCCGTGTTTCTTGGATGGGGTTTTGTTCATCGGAGAAAGGAAATGAGCCCAGTTTCAAGAACTGAACCACTGAAGAATGCCACGAATACTGGTGGAATTCATTCAGTGGACACAAAAGATGGGGACCTCCCCTTGCCAATTCTTCTAGATGCAGCTCAAGAAACTGGTGGAGTAAAACTTTCAGTGGTTCAAGCATACCTGTCAGAATTTTTTGGAAAATATGGAGCGTGGGTAGCCAGGAGACCGACTCTTGTTCTCTTTTCATCCTTGGCTTTCGTACTTGTTCTATGTTTAGGATTAATTCGTTTCAGAGTTGAGACACGACCTGAAAAGCTTTGGGTGGGACCTGGGAGCAGGGCTGCAAAAGAGAAGCAGTTTTTTGACACCCATCTGGCACCTTTCTACAGAATTGAACAGCTTGTAGTAGCAACAATTCCTGATGGACAGGGTAAATCACCCAGTATTTTGACAGAGGATAACATTAAACTACTCTTTGAAATACAGAAGAAGGTTGATGGAATTAAAGCAAATTTTTCTGGTTCAATGGTAACACTGACAGACATTTGTAACAAGCCACTCGGCGAAGCTTGTGCTACTCAGAGCATCTTACAGTACTTCAAAATGGACCCTGACAATTTCGAGAACTACGCTGGAGTGGATCATGCTGAGTACTGTTTTCAGCATACTTCTGCAGAAACATGTTTGAGTGCATTCAAAGGCCCACTTGATCCTAGCACTGCACTAGGTGGTTACTCAGGGAGCAATTACAATGAGGCTTCAGCATTTATAGTTACGTATCCAGTGAACAGTGCTGTTGATAGAGAAAGTAATGAAGCAGGAAGAGCAGTGGCTTGGGAGAAAGCTTTCATTCAGCTAGCAAAGGATGAATTGATGACAATGGTTCAGTCAAAAAGCTTGACACTTTCTTTTTCGTCGGAGAGCTCCATTGAAGAAGAACTGAAGAGAGAGAGCACTGCAGATGTTATTACTATAGTGATAAGCTATCTGGTGATGTTTGCATATATATCCCTTACTCTCGGCGACACACCCCGGTTGTCTTACTTCTACATTTCATCTAAGGTACTACTTGGACTCTCTGGAGTTATCTTGGTCATGCTCTCTGTGCTCGGATCAGTTGGATTTTTCAGTGCTATTGGAGTTAAATCTACTCTTATCATAATGGAAGTCATTCCTTTCCTTGTCTTGGCTGTTGGGGTGGATAATATGTGCATCTTAGTTCATGCTGTTAAAAGACAGCCACAAGAGTTGTCTTTAGAGGGACGAATAAGTAATGCTCTTGTGGAAGTTGGACCATCTATTTCACTTGCCAGTCTATCAGAGGTATTAGCATTTGCAGTTGGAACTTTCATCCCAATGCCAGCTGTTCGTGTGTTCTCCATGTTTGCAGCATTAGCTGTTCTTCTGGACTTCCTGCTGCAAGTTACTGCATTTGTTGCATTGATAGTATTGGACTTTCTGAGGACAGAAGATAATAGAGTTGATTGTTTTCCTTGCATGAAACTCTCCTCGAGACACTCAACAAATGGCATTGGTGAAAGAAAATCTGGGCTGCTAGCTCGTTATATGAAGGAGGTTCATGCACCCATTCTGAGTCTCTGGGGAGTAAAAATATTGGTTGTTTCTGTGTTTGTTGCTTTTGCATTGGTTAGCATTGCATTGTGCACCAGGATTGAACCTGGTCTGGAGCAACAGGTTGTTCTTCCCAGGGACTCTTATCTACAGGGATATTTCAAAAATCTGTCAGAGTTACTTAGGATTGGACCTCCAGTATATTTTGTGGTGAAAGACTATAATTATAGCTCAAAATCGGAGGAAACCAATAAGTTATGCTCTATCAGCCACTGTAATTCAAATTCTCTTGTAAATGAGATTTCAAAAGCATCTCTAATTCCAAAATCAAGTTATATAGCTAAACCAGCAGCTTCATGGCTTGATGACTTTCTAGTATGGGTATCTCCTGAAGCTTTTGGTTGCTGCAGAAAGTTCACAAACGAAACTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTCCTCCAGGTTCAGCTACATGTGGTGTCAGTGAAGTATGCAAAGACTGTACAACGTGCTTTCTTCACTCTGACTTGGTTGATGATCGTCCTACTACTTCCCAATTCAAAGATAAGCTTCCCTGGTTTCTCAAGGCTCTACCTTCCGCTGATTGTGCCAAAGGAGGACATGGGGCCTATACAAACAGCATCGACTTGCAAGGTTATGAAAATGGTATAATTCAAGCATCAGAATTTCAAACTTTCCACACTCCCCTGAACAGACAAGTCGACTATGTCAATGCATTGAAAGCAGCACGAGAATTTACATCTAGAGTTTCTAAATCTTTGCAGATTGAGATATTTCCATATTCAGTATTTTACATGTTCTTTGAACAATACCTGGATATTTGGAGAACAGCATTGATCAACCTTGCCATTGCTATCGGGGCTGTTTTTGTTGTATGCTTGATTATTACATGGAGTGTATGGAGCTCGTTGATCATTCTTCTTGTTATAACAATGATAGTGCTGGACCTAATGGGTGTTATGGCGATTCTAAGAATTCAACTGAATGCAGTCTCAGTGGTTAATCTTGTAATGTCAGTTGGCATTGCTGTTGAGTTCTGTGTACATATAACACATGCTTTCTTGGTAAGTGGTGGAAATAGGGATCAACGCATGAAGGAAGCTTTGGGGACAATGGGGGCTTCTGTATTCAGTGGCATCACACTAACAAAGTTAGTCGGGGTCATTGTCCTGGCCTTCTCTAGATCAGCTGTCTTTGTGGTGTATTACTTCCAGATGTACTTGGCTCTAGTCATCCTTGGTTTCCTGCATGGTCTTATATTCTTACCTGTGGTATTGAGCTTGTTTGGACCGCCTTCACGTTACATTGCAGAGAAGCAAGATCCACGACCATCTACATCTTCACAGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52489.p1 GENE.S_Transcript_52489~~S_Transcript_52489.p1 ORF type:complete len:1289 (+),score=229.91,Patched|PF02460.14|3.5e-57,Patched|PF02460.14|2.9e-33,NPC1_N|PF16414.1|7.8e-64,Sterol-sensing|PF12349.4|5.4e+03,Sterol-sensing|PF12349.4|1.6e-49,Sterol-sensing|PF12349.4|2.7e+03,Sterol-sensing|PF12349.4|36 S_Transcript_52489:536-4402(+)
MAFRLGLLHFTLFSLQVLFTTSVADAARSNSRFLLTPNTTSGVRHAPGYCAMYDICGARSDGKVLNCPLNTPAVKPDALFSSKIQSLCPTITGDVCCTEDQFETLRSQVQQAVPFLVGCPACLRNFLNLFCEMSCSPNQSLFINVTSVKKVNNNLTVDAIEFYITDTFGEGLYNSCKDVKFGTMNTRAIEFVAGGAQDFKGWYSFIGRQVGLNVPGSPYAINFTSSVPETSGMSPMNDTAYSCGDNLLGCSCGDCPSSPTCSSSAAPSVTKGRTCSIKMGSLKAKCSDVALAIVYIVLVSVFLGWGFVHRRKEMSPVSRTEPLKNATNTGGIHSVDTKDGDLPLPILLDAAQETGGVKLSVVQAYLSEFFGKYGAWVARRPTLVLFSSLAFVLVLCLGLIRFRVETRPEKLWVGPGSRAAKEKQFFDTHLAPFYRIEQLVVATIPDGQGKSPSILTEDNIKLLFEIQKKVDGIKANFSGSMVTLTDICNKPLGEACATQSILQYFKMDPDNFENYAGVDHAEYCFQHTSAETCLSAFKGPLDPSTALGGYSGSNYNEASAFIVTYPVNSAVDRESNEAGRAVAWEKAFIQLAKDELMTMVQSKSLTLSFSSESSIEEELKRESTADVITIVISYLVMFAYISLTLGDTPRLSYFYISSKVLLGLSGVILVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQPQELSLEGRISNALVEVGPSISLASLSEVLAFAVGTFIPMPAVRVFSMFAALAVLLDFLLQVTAFVALIVLDFLRTEDNRVDCFPCMKLSSRHSTNGIGERKSGLLARYMKEVHAPILSLWGVKILVVSVFVAFALVSIALCTRIEPGLEQQVVLPRDSYLQGYFKNLSELLRIGPPVYFVVKDYNYSSKSEETNKLCSISHCNSNSLVNEISKASLIPKSSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNETYCPPDDQPPCCPPGSATCGVSEVCKDCTTCFLHSDLVDDRPTTSQFKDKLPWFLKALPSADCAKGGHGAYTNSIDLQGYENGIIQASEFQTFHTPLNRQVDYVNALKAAREFTSRVSKSLQIEIFPYSVFYMFFEQYLDIWRTALINLAIAIGAVFVVCLIITWSVWSSLIILLVITMIVLDLMGVMAILRIQLNAVSVVNLVMSVGIAVEFCVHITHAFLVSGGNRDQRMKEALGTMGASVFSGITLTKLVGVIVLAFSRSAVFVVYYFQMYLALVILGFLHGLIFLPVVLSLFGPPSRYIAEKQDPRPSTSSQF*

Click here to download the sequence:
Link to NCBI Protein BLAST