Transcript Information: S_Transcript_52513.p1


Annotated TAIR IDAT5G61140.2
Annotated Gene NameU5 small nuclear ribonucleoprotein helicase
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24589999-24603311 | Forward length=2157
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.7259346117119
Replicate 211.820855282962
Replicate 310.470828215403
Condition 2: 8 Hour
Replicate 115.373408763926
Replicate 215.295257204546
Replicate 315.295341029529
Condition 3: 24 Hour
Replicate 112.412813090314
Replicate 210.207365519118
Replicate 311.335479880544


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52513.p1 GENE.S_Transcript_52513~~S_Transcript_52513.p1 ORF type:complete len:2096 (+),score=369.64,Sec63|PF02889.12|3.6e-100,Sec63|PF02889.12|2.3e-80,DEAD|PF00270.25|2.4e-26,DEAD|PF00270.25|2.9e+03,DEAD|PF00270.25|5.6e-22,ResIII|PF04851.11|2.2e-13,ResIII|PF04851.11|4.1e-10,Helicase_C|PF00271.27|4.7e-07,Helicase_C|PF00271.27|8.3e-09,AAA_22|PF13401.2|0.018,AAA_22|PF13401.2|0.48 S_Transcript_52513:87-6374(+)
ATGCTGCTTCAACTCCCTCGCTTGACGAACTCTCTCAGAGACCCCTTCGACATCGATCGCGCTTACCTTCACCGCAAAACTCTCCTCCAAAACCTCATTCCTCCGAGTTCTGCGAATTCGCTCGATGAATCGGAACTAGCGCGAAAGATAGTGTATAAGTGGGATGAAGCTTCTCCTGAATTGCGACAGGCATACAAACAGTTTATCAGTGCGGTTGTTGAGTTCGTAGATAGGGAAGTGGCGTCGGAGGAGTTCCGTGAGGTGGCATGGGCTGCATATCGTCTGTTTAGTGACCTGGAAGTGGAGGAGGAGGATCACAACAGAAGGATTGTAGAGAAAAAGTCGGAATTTCAAAAATTATTGGGCCATGCCATTTCCGATGTTAGCCTACAGAAAGTCGTACATTTTGCACAGACTCTGTCTAGCCTGCAACCTAAAAATAATACAGCTTCTCTGAACTCAGATGAGAATTGTATTGACAATGATGTAGAATTTGGATCCAACTTTGATTTTAAACCTCCTTCACGGTTTTTAGTAGATACTTTGATTGAAGATGAGGACATTCTGGGACCAGAAGGCTTGGCTCCAACAACTTCAGTGCACAACGACTGGCCTGCAACTGATGGTGTTGACAATCTTTTTTCTGCTGGCGGGGTTTCATATGACTTAAAATGGTTGAGGGAATCATGTGATCAAATAGTGCGGGGAAATTCCTCACAGCTTTCACGAGATGAACTAGCCATGGCAATTTGTCAAGTTCTTGATTCAAACAAACCTGGTGAAGAGATTGCTGGTGACTTATTGGACTTGGTTGGGGATAGTGCTTTTGATACTGTTCAAGAAATTATTTCTCACAGAAAGGAACTTGTTGAAGCAATTCGTCATGGATTACTAGTACTACGATCTGATAAATCATCTACCGGTGCTCAGCCGCGTATGCCCAGCTATGGAACTCAGGTCACTGTACAAACTGAATCTGAACGTCAAATGGATAAAATTAGACGCAAAGAAGAAAAACGGCATAAACGCGGAGTGGAGCATGGCATTGAGGATGAATTTTCGAGTTCAAGTTTTTCTTCATTACTTGAAGCAAGTGAGAGGAAAAATCTTTTTGATGATGTGATTGGAAGTGGACCAGGGCCCCAATCTTTAGGAGTTTCTGCGCTTCCACAAGGAACTGTTAGGAAGCATTTCAAGGGCTACGAAGAAGTCATAATCCCTCCTACACCAACAGCTCCAATGAAGCCTGGGGAGAAACTGATAGCGATCAAAGAATTGGATGACTTTGCGCAAGCTGCTTTTCATGGCTACAAATCTCTCAATCGTATCCAAAGCAGGATATTTCAGACAGTATACCACACTAATGAGAATATACTGGTATGTGCACCTACAGGAGCTGGCAAAACAAACATAGCTATGATTTCTATCCTGCATGAGATTGGGCAGCATTTTAAGGATGGGTACCTGCACAAAGATGAGTTTAAGATAGTTTATGTTGCTCCAATGAAGGCATTAGCTTCTGAAGTCACATCGACATTTAGCCATCGTTTGTCTCCGTTAAATATGACAGTTAAGGAGCTTACTGGTGACATGCAACTGTCTAAGAATGAACTTGAAGAAACTCAGATGATAGTGACTACACCTGAAAAATGGGATGTCATCACACGCAAGAGCAGTGACATGTCACTTTCAATGCTCGTCAAGCTTTTAATCATTGATGAAGTACACCTTCTAAATGATGATAGAGGACCTGTCATAGAAGCATTAGTTGCCCGTACACTTCGTCAGGTTGAGTCAACCCAGTCTATGATTCGCATTGTGGGCCTCTCGGCCACCTTACCCAACTACCTGGAGGTGGCACAATTTTTGAGGGTGAATCCAGAAACAGGGCTCTTTTTCTTTGATTCGAGCTATCGCCCAGTGCCTCTTGCCCAACAGTACATTGGCATCAGTGAAAAGAACTTCTTGGCACGTACTGAGTTGCTAAACAAGATTTGCTACAACAAGGTAGTTGATTCACTGAGGCAAGGACACCAAGCAATGGTCTTTGTTCATTCACGAAAAGATACAGGGAAAACTGCAGAACGACTGGTTGAGCTTGCCCGTGAGGACAACAATTTGGAGCTTTTTGAGAATGAGACTCATCCTCAATTTCAGCTCATGAAGAAGGAGGTAATGAAGTCGAGAAACAAAGAACTGGTTGGACTTTTTGATCATGGGTTCGGTATTCATCATGCTGGAATGTTACGTGCTGATAGGGGTCTCACTGAGCGACTTTTCTCCAATGGACTCTTAAAGGTACTTGTTTGCACAGCAACCTTAGCATGGGGGGTAAACTTACCTGCTCACACTGTCGTGATCAAGGGTACTCAAATATATGATCCAAAGGCTGGTGGCTGGCGGGACCTAGGCATGCTTGATGTTATGCAGATCTTTGGACGTGCAGGAAGGCCTCAGTTTGACCAAAGTGGTGAAGGAATTATCATCACATCTCATGACAAATTAGCTCATTACCTGCGGCTACTCACTAGCCAACTCCCAATTGAAAGTCAGTTCATTAGCTCCTTGAAAGATAATTTGAATGCCGAGGTAGCCTTGGGGACCGTAACAAATGTGAAAGAAGCTTGTGCATGGCTTGGTTATACATATCTATTCATAAGGATGAAGATGAACCCTTTGGCATATGGTATTGGCTGGGATGAGGTAGTTGCAGACCCCTCTTTAGGTTTGAAACAAAGAGCTTTTATAACAGATGCAGCTCGTGCACTTGACAAAGCAAAAATGATGCGTTTTGATGAGAAAAGTGGCAACTTTTATTGTACGGAACTCGGTCGCATTGCCAGCCATTTCTATATACAGTATTCCAGTGTCGAAACGTACAATGAAATGTTAAAACGCCATATGAGTGACAGTGATGTTATTGATATGGTTGCACATTCTTCGGAGTTTGAAAATATTGTTGTTCGAGAAGAGGAGCAAATGGAGCTAGAAGCTTTAGCACGTGAATGTCCACTTGAGGTTAAAGGTGGTCCTTCTAGTAAATATGGAAAAATTTCAATTCTCATTCAGTTGTACATATCACGAGGATCCATAGAGACCTTTTCCTTGGTTTCTGATGCAGCATATATAAGTGCAAGCTTGGCTCGTATCGTGCGTGCTTTATTTGAGATATGTTTGCGCCGGGGGTGGTCTGAGATGACTTCCTTCATGTTAGAATATTGCAAGGCTGTTGACCGGCAAATATGGCCCTATCAACATCCACTCAGGCAATTTGACAAAGATGTCTCCTTAGAGATTTTGAGGAAGCTCGAAGATCGTGGAGCTGATCTAGACCGTCTATATGATATGGAGGAAAAAGACATTGGAGCACTAATACGTTATGTCCCTGGAGGAAGGACAGTGAAGCAATATTTGGGCTATTTCCCAATGGTTCAGTTGTCTGCTACTGTGAGTCCAATCACCAGAACTGTTTTGAAGGTTGATTTGCTTATTACCCCTGATTTCATATGGAAGGATCGATTCCATGGTGCTGCTCAGCGATGGTGGATCCTTGTGGAGGATTCTGAAAATGACCACATATATCACTCAGAACTTTTCACTCTTACAAAGAGGGCGTCAAAAGGGGAGCCTCAAAAGCTTTCCTTTACTGTGCCCATATTTGAACCACATCCGCCACAGTACTACATTCGTGCTGTTTCTGATTCTTGGCTACAGGCAGAATCTTTTTACACCATTACCCTTCACAACCTTGCACTACCTGAGGTGCACAGTTCGCATACAGAATTGTTGGACTTAAAACCTCTACCAATAACTTCACTTGGCAACAATACTTATGAATCCCTGTACAAGTTTTCACACTTCAATCCTATTCAGACACAGGCTTTTCATATCTTGTATCACACGGACAACAATGTTCTCTTGGGAGCTCCAACTGGAAGTGGGAAAACCATATCTGCAGAGCTTGCAATGTTCCGTCTTTTCAATACCCAGCCTGACATGAAGGTTATTTATATAGCACCATTGAAGGCGCTGGTTCGAGAAAGAATGAATGACTGGAGAAGGCGTCTTGTGAAACAGCTTGGGAAACAGATGGTTGAAATGACTGGTGATTACACTCCAGATTTGATGGCCCTTCTGTCTGCAGATATAATAATTTCAACTCCTGAGAAGTGGGATGGGATCAGCCGTAACTGGCATACTCGAAGCTATGTAAAAAAGGTAGGGCTTATGATATTGGATGAGGTTCACCTACTTGGTGCTGATCGGGGTCCTATTCTTGAGGTTATTGTTTCACGAATGAGATATATATCATCACAGACAGAACGCTCAGTGCGGTTTGTGGGTCTGTCAACAGCTTTAGCAAATGCAGGGGATTTGGCTGACTGGTTGGGGGTGGGGGAGACGGGACTCTATAATTTCAAACCTAGCGTTCGGCCTGTACCACTTGAAGTGCACATTCAGGGCTACCCAGGAAAGTTCTATTGTCCAAGGATGAACAGCATGAATAAACCTGCATATGCTGCCATCTGTAGCCATTCACCCACCAAACCAGTTCTTGTGTTTGTCTCATCACGTCGACAGACAAGACTTACTGCTTTGGACCTGATTCAGTTTGCAGCATCTGATGAGCATCCAAGAAAGTTCTTGAATATTTCGGAAGAGGCACTGCAGATGCTTCTTTCCCAGATTGCAGATCAGAACCTGAGACACACCTTGCAATTTGGTATTGGCCTTCACCATGCTGGATTAAATGACAAGGATCGAACTATAGTTGAAGAACTGTTTGGAAACAACAAAATTCAGGTATTGGTGTCAACTAGCACATTGGCTTGGGGTGTGAACCTTCCTGCGCATCTGGTTATCATCAAGGGAACAGAATACTACGATGGGAAATTGAAAAGGTATGTTGATTTTCCTATCACAGATATCTTGCAGATGATGGGTCGTGCAGGAAGACCACAATATGACCAGCATGGGAAAGCTGTCATTCTGGTTCATGAACCCAAAAAAAGTTTCTACAAAAAGTTCCTTTATGAACCCTTTCCAGTTGAAAGTAGTCTGAGGGATCAGTTGCATGATCACTTCAATGCAGAGATTGTTTCCGGGACAATTTGCCATAAAGAGGATGCAATACACTATCTGACCTGGACGTATTTTTACCGAAGACTTATGGTTAATCCAGCATACTATGGTTTAGAAGATACCAGTCCAGGGTTCATAAGTTCATACTTGTCAAGGTTGGTGCAAAGTACATTTGAGGACTTAGAAGACAGTGGATGCATCAAAATAAAAGAGGACAGAGTAGAACCTATGATGCTGGGTTCAATTGCTTCTCAGTATTACCTTAGTTATTTGACTGTATCAATGTTTGGCTCAAATCTTGGTCCAGACCTTTCCCTTGAAGTTCTTTTGCACATACTGTCTGCTTCTTCAGAGTACAATGAGCTTCCAGTGCGGCATAATGAGGAGAATTACAATGGAAAACTTGCCGAGAAAGTTCCGTATATGGTAGACAAAAACAGACTTGATGACCCACATGTTAAAGCAAATTTGCTTTTTCAGGCACACTTTTCTCAGGTGGAGATGCCAATCAGCGACTATATAACAGACCTAAAGTCTGTTTTAGATCAAAGTATACGTATAATCCAGGCCATGATAGATATATGTGCTAATAGTGGATGGCTGTCGAGCACGATTATGTGTATGCATCTCTTACAAATGGTTATGCAGGGCCTATGGTTCAACAAGGATTCTGCTCTACAGATGTTGCCATGCATGACTGAGGATCTTGTCGGGACACTGAGGAAATGGGGTATATCAAATGTACAGCAACTTGTCGATTTATCTAGGGCAAAGTTGCAAGATTTGCTTGGAAGTTTCCCAGTTTCTAATTTATCTCAGGAGGTGCAAAGATTCCCACGTATACAGATGAAACTGAGGCTCCAAAGCAAGGATGAGGGCTCTGCAAGTTCATGTTCTCTTAATGTTAGGTTGGAGATTGTAAACAACAAGCGGAAAACATCAAGAGCATTCACCCCTCGGTTCCCCAAGGTTAAAGATGAAGCATGGTGGCTGGTTCTCGGTAATACTCTCACCTCTGAGCTGTATGCTCTGAAAAGAGTTACATTTACTAATCATCTGGTCACGCGTATGGACTTGCCATCAACTTCAGGAATAAGCCAGGGATTGAAGCTCATCTTGGTCTCAGATTGTTATCTTGGTTATGAAATGGAGTATTCCCTTGATGAACTCCTTAAGAATCGTCCACAACAAGTATCCACCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52513.p1 GENE.S_Transcript_52513~~S_Transcript_52513.p1 ORF type:complete len:2096 (+),score=369.64,Sec63|PF02889.12|3.6e-100,Sec63|PF02889.12|2.3e-80,DEAD|PF00270.25|2.4e-26,DEAD|PF00270.25|2.9e+03,DEAD|PF00270.25|5.6e-22,ResIII|PF04851.11|2.2e-13,ResIII|PF04851.11|4.1e-10,Helicase_C|PF00271.27|4.7e-07,Helicase_C|PF00271.27|8.3e-09,AAA_22|PF13401.2|0.018,AAA_22|PF13401.2|0.48 S_Transcript_52513:87-6374(+)
MLLQLPRLTNSLRDPFDIDRAYLHRKTLLQNLIPPSSANSLDESELARKIVYKWDEASPELRQAYKQFISAVVEFVDREVASEEFREVAWAAYRLFSDLEVEEEDHNRRIVEKKSEFQKLLGHAISDVSLQKVVHFAQTLSSLQPKNNTASLNSDENCIDNDVEFGSNFDFKPPSRFLVDTLIEDEDILGPEGLAPTTSVHNDWPATDGVDNLFSAGGVSYDLKWLRESCDQIVRGNSSQLSRDELAMAICQVLDSNKPGEEIAGDLLDLVGDSAFDTVQEIISHRKELVEAIRHGLLVLRSDKSSTGAQPRMPSYGTQVTVQTESERQMDKIRRKEEKRHKRGVEHGIEDEFSSSSFSSLLEASERKNLFDDVIGSGPGPQSLGVSALPQGTVRKHFKGYEEVIIPPTPTAPMKPGEKLIAIKELDDFAQAAFHGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISILHEIGQHFKDGYLHKDEFKIVYVAPMKALASEVTSTFSHRLSPLNMTVKELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQSMIRIVGLSATLPNYLEVAQFLRVNPETGLFFFDSSYRPVPLAQQYIGISEKNFLARTELLNKICYNKVVDSLRQGHQAMVFVHSRKDTGKTAERLVELAREDNNLELFENETHPQFQLMKKEVMKSRNKELVGLFDHGFGIHHAGMLRADRGLTERLFSNGLLKVLVCTATLAWGVNLPAHTVVIKGTQIYDPKAGGWRDLGMLDVMQIFGRAGRPQFDQSGEGIIITSHDKLAHYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWDEVVADPSLGLKQRAFITDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLKRHMSDSDVIDMVAHSSEFENIVVREEEQMELEALARECPLEVKGGPSSKYGKISILIQLYISRGSIETFSLVSDAAYISASLARIVRALFEICLRRGWSEMTSFMLEYCKAVDRQIWPYQHPLRQFDKDVSLEILRKLEDRGADLDRLYDMEEKDIGALIRYVPGGRTVKQYLGYFPMVQLSATVSPITRTVLKVDLLITPDFIWKDRFHGAAQRWWILVEDSENDHIYHSELFTLTKRASKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLQAESFYTITLHNLALPEVHSSHTELLDLKPLPITSLGNNTYESLYKFSHFNPIQTQAFHILYHTDNNVLLGAPTGSGKTISAELAMFRLFNTQPDMKVIYIAPLKALVRERMNDWRRRLVKQLGKQMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHTRSYVKKVGLMILDEVHLLGADRGPILEVIVSRMRYISSQTERSVRFVGLSTALANAGDLADWLGVGETGLYNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICSHSPTKPVLVFVSSRRQTRLTALDLIQFAASDEHPRKFLNISEEALQMLLSQIADQNLRHTLQFGIGLHHAGLNDKDRTIVEELFGNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYYDGKLKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTICHKEDAIHYLTWTYFYRRLMVNPAYYGLEDTSPGFISSYLSRLVQSTFEDLEDSGCIKIKEDRVEPMMLGSIASQYYLSYLTVSMFGSNLGPDLSLEVLLHILSASSEYNELPVRHNEENYNGKLAEKVPYMVDKNRLDDPHVKANLLFQAHFSQVEMPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSTIMCMHLLQMVMQGLWFNKDSALQMLPCMTEDLVGTLRKWGISNVQQLVDLSRAKLQDLLGSFPVSNLSQEVQRFPRIQMKLRLQSKDEGSASSCSLNVRLEIVNNKRKTSRAFTPRFPKVKDEAWWLVLGNTLTSELYALKRVTFTNHLVTRMDLPSTSGISQGLKLILVSDCYLGYEMEYSLDELLKNRPQQVSTK*

Click here to download the sequence:
Link to NCBI Protein BLAST