Transcript Information: S_Transcript_52542.p1


Annotated TAIR IDAT1G59760.1
Annotated Gene NameRNA helicase, ATP-dependent, SK12/DOB1 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:21984571-21990110 | Reverse length=988
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.123444984331
Replicate 214.486597513831
Replicate 314.988321416537
Condition 2: 8 Hour
Replicate 118.063337896094
Replicate 216.249271956846
Replicate 316.014611832254
Condition 3: 24 Hour
Replicate 115.798328851158
Replicate 213.536969661627
Replicate 313.988917448415


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52542.p1 GENE.S_Transcript_52542~~S_Transcript_52542.p1 ORF type:5prime_partial len:961 (+),score=224.73,rRNA_proc-arch|PF13234.2|1.3e-68,DSHCT|PF08148.8|3e-47,DEAD|PF00270.25|8.7e-18,DEAD|PF00270.25|1.6e+02,Helicase_C|PF00271.27|3.3e-06 S_Transcript_52542:2-2884(+)
ACAACAGTAGCTTGTGTTCATGATGTTTCTTACCCTCAAGGTTACATCTTTACTAACCCTTCAACAACAACAACAACAACCACCACCCCAGCTAGGGAATTCCCCTTCACTCTTGACCCTTTTCAGGCTGAAGCTATCAAGTGCCTTGAAGCTAGTGAATCTGTCTTGGTGTCAGCCCACACATCAGCTGGAAAAACAGTCGTAGCATTATATGCTATAGCTATGTCACTACGTAACAAGCAAAGGGTGATATATACTTCACCAATCAAGGCACTTAGCAACCAGAAATATCGGGAATTCAAAGAAGAGTTTTCAGATGTTGGTTTGATGACGGGGGATGTCACTATTGATCCCAATGCATCTTGCTTGGTGATGACAACAGAAATCTGGCGGAGTATGCAATATAGAGGATCAGAAATTACAAGAGAGGTGGCATGGGCAATATTTGATGAGGTCCATTACATGCGTGACAGGGAACGGGGTGTGGTATGGGAAGAAAGCATAGTAATGGCTCCAAAGAACTCTCGGTTTGTTTTTCTTTCTGCAACTGTGCCAAATGCCAAGGAGTTTGCAGATTGGGTTGCAAAGGTCCACCAGCAGCCATGTCATATTGTTTATACAGATTATAGGCCAACACCACTTCAGCACTATATTTTTCCTTCAGGTGGTAAAGGGCTGTACTTAGTGGTAGATGAAAAGGGGAAATTTCGTGAAGATAGTTTCCAGAAAGCCTTGAATGCTCTTGTCCCTGCCGCTGAGGGTGACAAGAAGAGGGAGAATGGAAAGTCGCAAAAGGGTGTGGCAGTTGGTAAGCTAGGAGAAGAAAGTGATATATTCAAGTTGGTGAAAATGCTTATACAGCGTCAGTATGACCCTGTTATATTGTTTAGCTTCAGCAAGAGAGAGTGTGAATTTCTTGCCATGCAGATGGCAAAGATGGATTTAAATGGGGATGATGAGAAGGAGAATATACAAAATATCTTCTCAAGTGCAATGGACATGTTGTCTGATGATGACAAGAAACTACCTCAGGTTTCAAATATGTTGCCATTGTTGAAACGTGGTATTGGGGTTCACCATTCTGGATTGCTTCCAATTCTGAAGGAAGTAATTGAGATTCTATTTCAAGAAGGGCTAATCAAGTGTTTATTTGCAACAGAGACCTTTAGTATTGGGTTGAACATGCCTGCAAAGACTGTTGTTTTTACGAACGTTCGTAAGTTCGATGGCGACAAGTTCAGATGGATATCCAGTGGAGAGTACATACAAATGAGTGGCCGTGCTGGTCGGCGTGGTATTGATGAGCGGGGGATTTGCATTCTAATGGTAGATGAGAAGCTTGAACCTTCAACAGCTAAAATGATGCTGAAGGGAAATGCCGATAGTTTAAACAGTGCCTTCCACCTTAGCTACAACATGCTCCTGAATCAGTTGCGCTGTGAAGACAGTAACCCTGAAAATTTGCTCCGTAACTCATTCTATCAGTTCCAATCAGATCGTGCCATACCTGATCTCAAGAGGCAAGCTAAGCAACTTGAAGAAGAAAGGGATTCAATCGTTATTGAAGAAGAAGATAGCTTGAAGAACTATTACTCTTTGGTAGAGCAGTGCAAAAGTTTAAAAAAAGATGTACGTGATATTGTTTTGTCACCAAAGTACTGCTTACCATTCTTGCAGCCTGGAAGACTTGTGTGCATTGAATGCACAAGGACTGATGAAGATTCAGCACAGTTCTCAATCAAGGATGACGTGACGTGGGGTGTTATTATAAATTTTGAAAAGGTGATGAGTAGTTCGGAAGATGAAGCAAGTAAAAGGCCAGAAGACGCAAATTACACTGTTCATGTTCTTACAAGGTTTATGGTGAGCAAAGAGAATGGGGCAAAGAGAACAACCAAAATCATTCCGCTGAAGGACCCTGGAGAGCCTCTTGTAGTGTCCGTTCCACTTTCCCAGATATACAGTTTGAGTAGCATTCGTGTGATCATATCAAAGGATCTCTTGCGGGTGGAAGCTAAAGAAAACACTTTAAAGAAGGTTTCAGAAATACTTGCAAGATTCTCGAAGGAAGGGGTTCCGTTGTTGGATCCTGAAGAGGATATGAAGGTTCAAAGCGGCTCTTACAGAAAGGCTGTTCGTCGAATTGAAGCTTTAGAGAGTCTGTTTGACAAGCATGAAGTAGCGAAATCACCATTGATTGAGCAGAAACTCAAGGTGTTACATCAGAAGCAAGAACTTACTGCAAAGATAAAATCTATTAAGAGACAAATGCGTTCCTCAACTGTATTGGCATTCAAGGGTGAACTCAAAGCAAGGAAACGGGTGCTAAGGAAGCTTGGATACATCACCAGTGATGATGTTGTGGAGCTGAAGGGGAAGGTTGCTTGTGAAATAAGTAGTGCTGATGAGTTGACATTGACAGAGCTTATGTTCAATGGTGTTTTCAAAGATATAAAAATAGAAGATATGGTGGCCCTTTTGTCTTTTCTTGTGTGGCAGGAGAAGCTTCAAGATGCTCAGAAGCCTAGAGAAGACCTTGAGCTGCTTTTTGCACAATTACAAGATACAGCAAGGAGGGTTGCCAAAGTTCAGCTTGAATGCAAGGTCCAAATTGATGTTGATAGCTTTGTGAGCTCATTCCGGCCTGATATCATGGAAGCAGTCTATGCTTGGGCCAAAGGATCCAAATTTTATGAGATCATGGAGATTTCACAGGTCTTTGAAGGTAGCTTGATCAGGGCCATCAGGAGATTGGAAGAAGTCCTTCAGCAACTCATTCTAGCAGCTCAATCTATTGGGGAGATTGAGTTAGAAGCTAAGTTTGAAGACGCTGTTACCAAGATTAAGAGGGATATCGTCTTCGCAGCATCACTGTACCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52542.p1 GENE.S_Transcript_52542~~S_Transcript_52542.p1 ORF type:5prime_partial len:961 (+),score=224.73,rRNA_proc-arch|PF13234.2|1.3e-68,DSHCT|PF08148.8|3e-47,DEAD|PF00270.25|8.7e-18,DEAD|PF00270.25|1.6e+02,Helicase_C|PF00271.27|3.3e-06 S_Transcript_52542:2-2884(+)
TTVACVHDVSYPQGYIFTNPSTTTTTTTTPAREFPFTLDPFQAEAIKCLEASESVLVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYRGSEITREVAWAIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYIFPSGGKGLYLVVDEKGKFREDSFQKALNALVPAAEGDKKRENGKSQKGVAVGKLGEESDIFKLVKMLIQRQYDPVILFSFSKRECEFLAMQMAKMDLNGDDEKENIQNIFSSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDEKLEPSTAKMMLKGNADSLNSAFHLSYNMLLNQLRCEDSNPENLLRNSFYQFQSDRAIPDLKRQAKQLEEERDSIVIEEEDSLKNYYSLVEQCKSLKKDVRDIVLSPKYCLPFLQPGRLVCIECTRTDEDSAQFSIKDDVTWGVIINFEKVMSSSEDEASKRPEDANYTVHVLTRFMVSKENGAKRTTKIIPLKDPGEPLVVSVPLSQIYSLSSIRVIISKDLLRVEAKENTLKKVSEILARFSKEGVPLLDPEEDMKVQSGSYRKAVRRIEALESLFDKHEVAKSPLIEQKLKVLHQKQELTAKIKSIKRQMRSSTVLAFKGELKARKRVLRKLGYITSDDVVELKGKVACEISSADELTLTELMFNGVFKDIKIEDMVALLSFLVWQEKLQDAQKPREDLELLFAQLQDTARRVAKVQLECKVQIDVDSFVSSFRPDIMEAVYAWAKGSKFYEIMEISQVFEGSLIRAIRRLEEVLQQLILAAQSIGEIELEAKFEDAVTKIKRDIVFAASLYL*

Click here to download the sequence:
Link to NCBI Protein BLAST