Transcript Information: S_Transcript_52555.p1


Annotated TAIR IDAT4G35800.1
Annotated Gene NameRNA polymerase II large subunit
Annotated Gene Symbol(s)NRPB1, RPB1, RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_I
Annotation TypeOrtholog
Chromosome Positionchr4:16961115-16967892 | Reverse length=1839
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 127.787855416388
Replicate 230.574537544195
Replicate 329.805727029543
Condition 2: 8 Hour
Replicate 139.335316880547
Replicate 240.277915593212
Replicate 337.39478831277
Condition 3: 24 Hour
Replicate 134.717012533996
Replicate 232.407945536236
Replicate 330.20836028559


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52555.p1 GENE.S_Transcript_52555~~S_Transcript_52555.p1 ORF type:3prime_partial len:521 (+),score=110.30,RNA_pol_Rpb1_1|PF04997.8|1.8e-112,RNA_pol_Rpb1_2|PF00623.16|1.3e+03,RNA_pol_Rpb1_2|PF00623.16|1.8e-72 S_Transcript_52555:963-2522(+)
ATGGATACGAGGTTCCCGTATTCACCGGCCGAGGTGGCCAAGGTTCACATGATCCAGTTCGGAATCCTCAGCCCCGACGAGATCAGGCAAATGTCGGTGGTGCAAGTGGAGTACAGCGAGACGACGGAGAGGGGGAAGCCGAAGCCGGGGGGTTTGAGTGACCCACGGCTCGGGACCATTGACCGGAAAATGAAGTGTGATACTTGTACTGCCAACATGGCTGAATGTCCCGGTCACTTTGGTCACCTTGAGCTTGCTAAGCCTATGTTTCATATCGGGTTCATGAAGACTGTGCTTAGCATTATGCGTTGCGTTTGCTTTAATTGCTCCAAGATTCTTGCAGATGAGGATGACCATAAATTTAAGCAAGCATTAAAAATCAGAAATCCCAAAAATAGGTTGAAGAGGATCTTGGATGCCTCAAAAAGTAAAAAGAAGTGTGAAGGAGGAGATGAGATAAACATGCAAGGTGAAGATAATGGAGAAGAATCAGTTAAAAAGAGTCGTGGTGGATGTGGTGCTCAGCAGCCAACCTTCACCATCGAAGGTATGAAAATGATTGCTGAGTACAAGATGACAAAGAAAAAGAGTGACGAGCAGGAGCAGCTTCCTGAACCTGTTGAGAGAAAGCAGCAACTTTCTGCTGAAAAGGTGCTTAGTGTTCTCAAGAGGATAAGCGATGAAGACTGCCAAATTCTGGGTTTCAATCCCAAATACGCTCGCCCTGACTGGATGATTCTTCAAGTCCTCCCAATTCCTCCACCTCCTGTGAGACCATCAGTCATGATGGATACCTCTTCGAGGAGTGAGGATGATCTGACCCACCAGTTGGCAATGATAATTCGGCACAATGATAATTTGAGAAGACAAGAGAGGAATGGGGCACCTGCACACATCATCTCAGAGTTTGCACAGTTGCTGCAATTTCATATTGCTACATACTTCGACAACGAGCTTCCTGGACAGCCACGGGCTACACAACGATCAGGTAGACCAATCAAATCGATATGTAGTAGGCTGAAAGCCAAGGAAGGTCGTATTAGGGGCAACTTGATGGGAAAACGAGTGGACTTTTCAGCACGTACTGTCATTACACCAGATCCCACTATTAATATTGATGAATTGGGGGTGCCTTGGAGTATTGCATTGAATCTCACATATCCTGAAACTGTCACTCCTTATAACATTGAAAGGTTGAAAGAGCTTGTTGACAATGGTCCTCATCCTCCTCCTGGAAAAACTGGTGCCAAGTATATAATTAGGGATGACGGACAGAGGCTTGATCTTCGTTATTTGAAGAAGAGTAGTGATCATCATTTGGAGCTTGGTTACAAGGTTGAAAGGCATCTGAATGATGGGGACTTTGTGCTTTTCAACCGACAGCCCAGTCTTCATAAAATGTCCATCATGGGTCATAGAATAAAGATTATGCCCTATTCTACATTTCGTTTAAATTTGTCTGTTACCTCACCGTACAATGCTGATTTTGATGGTGATGAAATGAACATGCACGTGCCACAATCCTTTGAGACTCGAGCAGAAGTTTTGGAGCTAATGATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52555.p1 GENE.S_Transcript_52555~~S_Transcript_52555.p1 ORF type:3prime_partial len:521 (+),score=110.30,RNA_pol_Rpb1_1|PF04997.8|1.8e-112,RNA_pol_Rpb1_2|PF00623.16|1.3e+03,RNA_pol_Rpb1_2|PF00623.16|1.8e-72 S_Transcript_52555:963-2522(+)
MDTRFPYSPAEVAKVHMIQFGILSPDEIRQMSVVQVEYSETTERGKPKPGGLSDPRLGTIDRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEDDHKFKQALKIRNPKNRLKRILDASKSKKKCEGGDEINMQGEDNGEESVKKSRGGCGAQQPTFTIEGMKMIAEYKMTKKKSDEQEQLPEPVERKQQLSAEKVLSVLKRISDEDCQILGFNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM

Click here to download the sequence:
Link to NCBI Protein BLAST