Transcript Information: S_Transcript_52620.p4


Annotated TAIR IDAT2G46830.1
Annotated Gene Namecircadian clock associated 1
Annotated Gene Symbol(s)CCA1
Annotation TypeOrtholog
Chromosome Positionchr2:19246005-19248717 | Forward length=608
E-Value4.4E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.5269094402531
Replicate 29.3599713274305
Replicate 313.04031844295
Condition 2: 8 Hour
Replicate 11.7232638640108
Replicate 21.581847883617
Replicate 31.0765579598475
Condition 3: 24 Hour
Replicate 16.8403170526103
Replicate 211.446369483004
Replicate 37.3882756338219


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52620.p4 GENE.S_Transcript_52620~~S_Transcript_52620.p4 ORF type:complete len:99 (+),score=18.99 S_Transcript_52620:258-554(+)
ATGGCTAGCCAAGATCAGACTAGTGGCGGTGCTCAATCAAGTGCCTTTCTTCAATCTGGGGATGGCGTTTCGTGGGATGCTGGTGTCCAATCACTAGCAGGGGAAGGCCATGTTCCGAAGGTGTTTGGTCTTTCTCTGCCCTTTAATGTGGCCCCTTTTGTTTGGGGGATCGTTGATTACAATCTAAAAATGTTGCAGTGCCTTACTCTTCTTCTGTCCTCTTCCTTATCTGAAACAGATCAGAAAGCCGTATACTATAACAAAGCAGAGGGAAAGGTGGACAGAAGAAGAGCATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52620.p4 GENE.S_Transcript_52620~~S_Transcript_52620.p4 ORF type:complete len:99 (+),score=18.99 S_Transcript_52620:258-554(+)
MASQDQTSGGAQSSAFLQSGDGVSWDAGVQSLAGEGHVPKVFGLSLPFNVAPFVWGIVDYNLKMLQCLTLLLSSSLSETDQKAVYYNKAEGKVDRRRA*

Click here to download the sequence:
Link to NCBI Protein BLAST