Transcript Information: S_Transcript_52672.p1


Annotated TAIR IDAT1G16840.4
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G78890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:5763111-5763984 | Reverse length=161
E-Value1.8E-25
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.99913127017
Replicate 217.266530958055
Replicate 314.968017691038
Condition 2: 8 Hour
Replicate 128.124790128393
Replicate 225.830298670989
Replicate 325.949727519108
Condition 3: 24 Hour
Replicate 117.623649965842
Replicate 219.48868821541
Replicate 318.520535022114


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52672.p1 GENE.S_Transcript_52672~~S_Transcript_52672.p1 ORF type:5prime_partial len:207 (+),score=32.15 S_Transcript_52672:3-623(+)
GGGACAGTACCGGGAGAAATATCCCTAATCCTTAAAATCCCTCATGTTCCCAACCCTACCCCCCTTAATATCCGTCATCATCCTCACCAAAACCCATTTATTCTCCCTCTCTCTCTAATGGCGCGATACTTCACTCAAACCCTAATCAAGCTCCCCCACTCTCTCTCCTCTCCCTCAAAACTCTCTCTCTCCTCATCATCTCGATTATTTGCAAGTAAAGCCCAACTCATCGAACTCGATCTCGATTCTTCCTCTTCTACAGACTCTACACCCGGAGGAGGGGGAGAAGTGGAGGTGATGGGGTTGAAGAGACTTGAGGATGCAATCCACAGTATTATCGTGCGCCGATTAGCACCAGATTGGCTCCCCTTTCGACCAGGTTCCTCCTACTGGGTCCCCCCCAAACGTAAAGCCGACAATATCCTCCAAGTTGTCGGAAAATTGACCAACCCTTTGACCCCCGAAGAAGCTCTCTCTGTTTCCTCTGCTCGTGGCTGGCCCTCCTCTTCCTATTTCTGTCAAGAAGGTTCAGTCTCTGGACATCCTATTCCTGTGGAGGTAGAAGTGCAGGTCCATGTGCAGGACAGCACAGAGAAATCAATATCTGAGGACGAGGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52672.p1 GENE.S_Transcript_52672~~S_Transcript_52672.p1 ORF type:5prime_partial len:207 (+),score=32.15 S_Transcript_52672:3-623(+)
GTVPGEISLILKIPHVPNPTPLNIRHHPHQNPFILPLSLMARYFTQTLIKLPHSLSSPSKLSLSSSSRLFASKAQLIELDLDSSSSTDSTPGGGGEVEVMGLKRLEDAIHSIIVRRLAPDWLPFRPGSSYWVPPKRKADNILQVVGKLTNPLTPEEALSVSSARGWPSSSYFCQEGSVSGHPIPVEVEVQVHVQDSTEKSISEDED*

Click here to download the sequence:
Link to NCBI Protein BLAST