Transcript Information: S_Transcript_526869.p1


Annotated TAIR IDAT1G54690.1
Annotated Gene Namegamma histone variant H2AX
Annotated Gene Symbol(s)HTA3, H2AXB, G-H2AX, GAMMA-H2AX
Annotation TypeOrtholog
Chromosome Positionchr1:20414607-20415206 | Reverse length=142
E-Value1.7E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6252214494767
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30.19253469011539


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_526869.p1 GENE.S_Transcript_526869~~S_Transcript_526869.p1 ORF type:5prime_partial len:131 (+),score=40.35,Histone_H2A_C|PF16211.1|1.1e-18,Histone_H2A_C|PF16211.1|1.6e+04,Histone_H2A_C|PF16211.1|1.6e+04 S_Transcript_526869:3-395(+)
CGTATTATTCCTCGTCATGTACAATTAGCTGTACGTAATGATGAAGAATTAAACAAATTATTAGGTGGTATTACTATCGCACAAGGTGGTGTATTACCAAATATTCAAGGTGTGTTATTACCAAAGAAGAAGGCTGGTGATAAAGAAAAACCAGAAAAAGAAAAGAGCGAGAAGAAAAAGAAGGTAAAGACTAACACATCAAAGAAAGCATCGAAATCTGGTGAAACTAAACCAAAGAAGGAAAAGAAATCAGGATCAAAGAAAGGTTCAAAGAAAGGAAGTAAGAAAGGATCGAAGAAATCTGGTTCAAAGAAATCATCAGGTTCCAAGAAAGGCTCAAAGAAGGCTGATAAGAAGGCCGATACCGAAGCTGCCAAGACTGCCTCTGAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_526869.p1 GENE.S_Transcript_526869~~S_Transcript_526869.p1 ORF type:5prime_partial len:131 (+),score=40.35,Histone_H2A_C|PF16211.1|1.1e-18,Histone_H2A_C|PF16211.1|1.6e+04,Histone_H2A_C|PF16211.1|1.6e+04 S_Transcript_526869:3-395(+)
RIIPRHVQLAVRNDEELNKLLGGITIAQGGVLPNIQGVLLPKKKAGDKEKPEKEKSEKKKKVKTNTSKKASKSGETKPKKEKKSGSKKGSKKGSKKGSKKSGSKKSSGSKKGSKKADKKADTEAAKTASE*

Click here to download the sequence:
Link to NCBI Protein BLAST