Transcript Information: S_Transcript_52702.p1


Annotated TAIR IDAT5G03560.2
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:901452-902719 | Reverse length=363
E-Value3.8E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0485481291074
Replicate 21.6393404005584
Replicate 31.7129476238638
Condition 2: 8 Hour
Replicate 12.7069380897909
Replicate 23.3938717750669
Replicate 33.0356934669633
Condition 3: 24 Hour
Replicate 11.5555180194541
Replicate 21.7541649826894
Replicate 31.093215546971


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_52702.p1 GENE.S_Transcript_52702~~S_Transcript_52702.p1 ORF type:complete len:323 (+),score=63.14,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|6.2e-15,PPR_2|PF13041.2|0.002,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|2.9,PPR|PF01535.16|0.064,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|0.067,PPR|PF01535.16|7.9e-05,PPR_1|PF12854.3|7.8e+03,PPR_1|PF12854.3|3,PPR_1|PF12854.3|6.4,PPR_1|PF12854.3|0.039,PPR_1|PF12854.3|0.0063,PPR_1|PF12854.3|0.1,PPR_3|PF13812.2|95,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|93,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.18 S_Transcript_52702:114-971(+)
ATGGCACTTGCATCACTTCGCAAAGCCCTTCTTCCCTCCATTATTCATCCACCTTTCAAATCCACCGTTTTCCTCACCATCCCCAAATTCTTAACAACAGCAGTTACAGCACCCTCCACTGCTACTACTTCTACTACATCCCAACAAAACCCAGAAAAGAAACTCAACACAAAGGTCAACTTCACCCCACTGGAATCCGACTCCGAACCCGAACCCGACCCGACCCAGATGGAGAAACGGGACTTGCCACCCCCTTACGACCCGTTTAGGAACAAACCCATCACGGAGGACCCCCATGACCCGAAGAATCTGCAAGAAGTTTTCCACAAAATGAGGTCAGAGGGGCTGATCAACAATGCAGCCAAGATGTTCGACGAAATGTCTAAGGATGGTTTAACACATGAAGCACTAGAGCTGTTTAGGGAGATCAAAGACAAGGGTAAAATGCCTGATGTGGTGGCCCACACAGCTGTGATTGAGGCCTATGCTAATGCAGGGCAGTGCAAGGAAGCTCACAAGGTGTATTTAAGGATGTTGAGTTGTGGGATTGCACCCAATGCTTACACTTATAGTGTGTTGATCAGGGGCCTTGCTGAAGGTGGGGATGAGAAGCTTGTTAAGAAGTATGTGTTGGAGATGTTGGGCCTCGGAATGAGGCCCAATGCTAGAGTGTGTGTCGCAGTTTTCGAGGCGTTTGCGAGGGAGGGGAAGGTGGAGGAAGGGAAGGAGTTGTTGAGGGAGATGAAGCAGAAGGGGTTTGTGGTTGATGAAAAGGGTGTTAGAGAAATACTACCCAAGGGGAAATCTAAAAGAGGTCCTGTATTTAGGACTGTCATGGATATTCTCTTTGCAAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_52702.p1 GENE.S_Transcript_52702~~S_Transcript_52702.p1 ORF type:complete len:323 (+),score=63.14,PPR_2|PF13041.2|1.7,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|6.2e-15,PPR_2|PF13041.2|0.002,PPR|PF01535.16|1.5e+02,PPR|PF01535.16|2.9,PPR|PF01535.16|0.064,PPR|PF01535.16|7.7e-05,PPR|PF01535.16|0.067,PPR|PF01535.16|7.9e-05,PPR_1|PF12854.3|7.8e+03,PPR_1|PF12854.3|3,PPR_1|PF12854.3|6.4,PPR_1|PF12854.3|0.039,PPR_1|PF12854.3|0.0063,PPR_1|PF12854.3|0.1,PPR_3|PF13812.2|95,PPR_3|PF13812.2|9.5e+02,PPR_3|PF13812.2|93,PPR_3|PF13812.2|0.1,PPR_3|PF13812.2|1.4,PPR_3|PF13812.2|0.18 S_Transcript_52702:114-971(+)
MALASLRKALLPSIIHPPFKSTVFLTIPKFLTTAVTAPSTATTSTTSQQNPEKKLNTKVNFTPLESDSEPEPDPTQMEKRDLPPPYDPFRNKPITEDPHDPKNLQEVFHKMRSEGLINNAAKMFDEMSKDGLTHEALELFREIKDKGKMPDVVAHTAVIEAYANAGQCKEAHKVYLRMLSCGIAPNAYTYSVLIRGLAEGGDEKLVKKYVLEMLGLGMRPNARVCVAVFEAFAREGKVEEGKELLREMKQKGFVVDEKGVREILPKGKSKRGPVFRTVMDILFAK*

Click here to download the sequence:
Link to NCBI Protein BLAST