Transcript Information: S_Transcript_531120.p2


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value1E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.48489647379153
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_531120.p2 GENE.S_Transcript_531120~~S_Transcript_531120.p2 ORF type:internal len:91 (+),score=7.31,AAA|PF00004.25|1.2e-27,RuvB_N|PF05496.8|1.2e-06,AAA_16|PF13191.2|4.6e-05,AAA_16|PF13191.2|86,IstB_IS21|PF01695.13|2.4e-06,AAA_17|PF13207.2|7.2e-06,AAA_22|PF13401.2|0.00091,AAA_22|PF13401.2|32 S_Transcript_531120:3-272(+)
CCAATCAAGTTTCCTCAATTGTTTACTGGTAAAAGAAAGCCATGGCGTGGTATTCTTCTTTACGGACCTCCTGGTACTGGAAAGTCTTATCTCGCCAAAGCCGTTGCCACTGAAGCCGACGCTACCTTTTACTCCGTTTCTTCCGCCGATCTTGTGTCAAAGTGGTTGGGTGAATCCGAAAAGCTCGTACGTAATTTATTTGAAATGGCAAGAGAAACGAAACCAAGTATTGTCTTTATTGATGAAATCGATTCTTTGTGCTCAAGTAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_531120.p2 GENE.S_Transcript_531120~~S_Transcript_531120.p2 ORF type:internal len:91 (+),score=7.31,AAA|PF00004.25|1.2e-27,RuvB_N|PF05496.8|1.2e-06,AAA_16|PF13191.2|4.6e-05,AAA_16|PF13191.2|86,IstB_IS21|PF01695.13|2.4e-06,AAA_17|PF13207.2|7.2e-06,AAA_22|PF13401.2|0.00091,AAA_22|PF13401.2|32 S_Transcript_531120:3-272(+)
PIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEADATFYSVSSADLVSKWLGESEKLVRNLFEMARETKPSIVFIDEIDSLCSSR

Click here to download the sequence:
Link to NCBI Protein BLAST