Transcript Information: S_Transcript_53187.p1


Annotated TAIR IDAT5G57120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23122767-23124400 | Reverse length=330
E-Value2E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.788770133764
Replicate 26.1827876341118
Replicate 35.4403351279058
Condition 2: 8 Hour
Replicate 13.0195242926914
Replicate 23.5636573054432
Replicate 31.9492368016355
Condition 3: 24 Hour
Replicate 15.9284049590993
Replicate 25.0141176053866
Replicate 32.1576380169568


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53187.p1 GENE.S_Transcript_53187~~S_Transcript_53187.p1 ORF type:complete len:339 (+),score=119.91,SRP40_C|PF05022.8|4.5e+03,SRP40_C|PF05022.8|9.6e+03,SRP40_C|PF05022.8|1.6e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.8e-29 S_Transcript_53187:288-1304(+)
ATGGCTTCCTCAAAACCCTCAAGAAGTTCACTCGTGAGGCCGATATCGAGCAATGACACCAATGATAAAAAGCAAGATAACAAGCAGGCAGATAAAGTTGAAAATCATGTTGAATCTGTGGAAAATGTTACAACAAAAGAAAATGGAGCTGTTGATGGGGAGAAGTCCAAGGCAATATTAGAAAATGACTCTGTTAATGGTGACAATGCAAAATCCAAGAAGAAAAAGAAAAGCAAAAATGCTAATGATACATTTAATGATGTTAATGGAGAAACTCACTTGAAAGATTTGGAACAGACGACGCAGGATTCAAGTGTGCCTACTGAACCTGAGAAGAAATCCAAGAACAAGAAGAAGAAACGAAAGCATGAATCAGAGCATTTGGACAAGGATTTACAGGAAAAACAGGCTGAAGTAGCAGCAGGAGAAACAACTTCAGACAAAACTGATAAAATGTCTCAAGAGAAGAAAATAAAGGAGGATACTCCTATTCCTAAAGATGAGGTTGATAAGGAGAAGAAAAGTTCTAAAAAAAGAAAGAAGCGCTCATCTGGTGACAATGAAATTGACAATGTTGAAGCAACACCATTAGATGATTCCAAACGCAGGAAGACAGATGATCCATATCAGTCAATTGGCACTGAGCAAGCCATACAAAGACCTACAGGAATGGCCAATGGAGTCGTGGGAGAAGATGGAGGTCCAAAATCCAAAAAGCAGGAGAAAACAAAGGAACACGATGGTTCTGCTGAGCCAAGGACGACTGCTAATGCATTCCGAAGGGTGAAACCAGATGAAGTGGAATTTGTAGATGAGAGGCTTCAAGACAACTCCTACTGGGCCAAGGATGGTGCGGATTCCGGCTATGGTGCAAAAGCCCAGGAGGTGTTGGGGCAGGTTAGAGGAAGGGATTTTCGGCATGAGAAGACCAAGAAAAAGCGTGGCTCATACAGGGGAGGGCAAATTGATTTGCAGTCACATTCAGTGAAGTTCAATTACGATGATGATGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53187.p1 GENE.S_Transcript_53187~~S_Transcript_53187.p1 ORF type:complete len:339 (+),score=119.91,SRP40_C|PF05022.8|4.5e+03,SRP40_C|PF05022.8|9.6e+03,SRP40_C|PF05022.8|1.6e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.8e-29 S_Transcript_53187:288-1304(+)
MASSKPSRSSLVRPISSNDTNDKKQDNKQADKVENHVESVENVTTKENGAVDGEKSKAILENDSVNGDNAKSKKKKKSKNANDTFNDVNGETHLKDLEQTTQDSSVPTEPEKKSKNKKKKRKHESEHLDKDLQEKQAEVAAGETTSDKTDKMSQEKKIKEDTPIPKDEVDKEKKSSKKRKKRSSGDNEIDNVEATPLDDSKRRKTDDPYQSIGTEQAIQRPTGMANGVVGEDGGPKSKKQEKTKEHDGSAEPRTTANAFRRVKPDEVEFVDERLQDNSYWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYDDDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST