Transcript Information: S_Transcript_53188.p1


Annotated TAIR IDAT5G57120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23122767-23124400 | Reverse length=330
E-Value7E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3177435632299
Replicate 23.6445906053712
Replicate 34.2978647510456
Condition 2: 8 Hour
Replicate 15.9761418292851
Replicate 25.1475049967513
Replicate 32.7037800796879
Condition 3: 24 Hour
Replicate 12.3198106361693
Replicate 22.5404862533959
Replicate 32.2320393278864


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53188.p1 GENE.S_Transcript_53188~~S_Transcript_53188.p1 ORF type:complete len:339 (+),score=121.47,SRP40_C|PF05022.8|5.5e+03,SRP40_C|PF05022.8|5.4e+03,SRP40_C|PF05022.8|6.1e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|1.8e-29 S_Transcript_53188:288-1304(+)
ATGGCTTCCTCAAAACCCTCAAGAAGTTCACTCGTGAGGCCGATATCGAGCAATGACACCAATGATAAAAAGCAAGATAACAAGCAGGCAGATAAAGTTGAAAATCATGTTGAATCTGTGGAAAATGTTACAACAAAAGAAAATGGAGCTGTTGATGGGGAGAAGTCCAAGGCAATATTAGAAAATGACTCTGTTAATGGTGACAATGCAAAATCCAAGAAGAAAAAGAAAAACAAAAATGCTAATGATACATCCAATGATGTTAATGAAGAAACTCACTTGAAAGATTTGGAACAGACGACGCAGGATTCAAGTGTGCCTACTGAACCTGAGAAGAAATCCAAGAACAAGAAGAAGAAACGAAAGCATGAATCAGAGCATTTGGACAAGGATTCACAGGAAAAAGAAGCTGAAGTAGCAGCAATAGAAACAACTTCAGACAAAACTGATAAAATGTCTCAAGAGAAGAAAATAAAGGAGGATACTCCTATTCCTAAAGATGAGGTTGATAAGGAGAAGAAAAGTTCTAAAAAAAGAAAGAAGTGCTCATCTGATGACAAAGAAATCAACAATGTTGAAACAACACCATTAGATGATTCCAAACGCAGGAAGACAGATGATCCATATCAGTCAAATGGCACTGAGCAAGCCACAAAAAGACCTACTGGAGTGGCCAATGGAGTCGTGGGTGAAGATGGAGGTGCAAAATCTAAAAAGCAGGAGAAAACAAAGGAACACAATGGTTCAGCTGAGCCAAGGACAACTGTTAACGCATTCCGAAGGGTGAAACCAGATGAAGTGGAATTTGTAGATGAGAGGCTTCAAGACAACTCCTACTGGGCCAAGGATGGTGCGGATTCCGGCTATGGTGCAAAAGCCCAGGAGGTGTTGGGGCAGGTTAGAGGAAGGGATTTTCGGCATGAGAAGACCAAGAAAAAGCGTGGCTCATACAGGGGAGGGCAAATTGATTTGCAGTCACATTCAGTGAAGTTCAATTACGATGATGATGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53188.p1 GENE.S_Transcript_53188~~S_Transcript_53188.p1 ORF type:complete len:339 (+),score=121.47,SRP40_C|PF05022.8|5.5e+03,SRP40_C|PF05022.8|5.4e+03,SRP40_C|PF05022.8|6.1e+03,SRP40_C|PF05022.8|1.1e+04,SRP40_C|PF05022.8|1.8e-29 S_Transcript_53188:288-1304(+)
MASSKPSRSSLVRPISSNDTNDKKQDNKQADKVENHVESVENVTTKENGAVDGEKSKAILENDSVNGDNAKSKKKKKNKNANDTSNDVNEETHLKDLEQTTQDSSVPTEPEKKSKNKKKKRKHESEHLDKDSQEKEAEVAAIETTSDKTDKMSQEKKIKEDTPIPKDEVDKEKKSSKKRKKCSSDDKEINNVETTPLDDSKRRKTDDPYQSNGTEQATKRPTGVANGVVGEDGGAKSKKQEKTKEHNGSAEPRTTVNAFRRVKPDEVEFVDERLQDNSYWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYDDDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST