Transcript Information: S_Transcript_53192.p1


Annotated TAIR IDAT5G57120.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 101969 Blast hits to 55488 proteins in 2506 species: Archae - 424; Bacteria - 13843; Metazoa - 37674; Fungi - 9726; Plants - 4941; Viruses - 569; Other Eukaryotes - 34792 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23122767-23124400 | Reverse length=330
E-Value1.1E-47
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.540379045006
Replicate 28.1588871667834
Replicate 37.9097949067521
Condition 2: 8 Hour
Replicate 110.966010338132
Replicate 210.965632593652
Replicate 38.8621685885043
Condition 3: 24 Hour
Replicate 17.695899873054
Replicate 27.9844062665031
Replicate 38.0026180278815


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53192.p1 GENE.S_Transcript_53192~~S_Transcript_53192.p1 ORF type:complete len:457 (+),score=149.82,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|7.5e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|2.9e-29 S_Transcript_53192:192-1373(+)
ATGAAGAAACAAATTGAGAACAACAACAAAACACCCCTTTCTTTAACCCCTGAGAATAAGTTACTTCTTCACCAGTCCATTTGTGGGTACCTCCAACTCAATGGCTTCCTCAAAACCCTCAAGAAGTTCACTCGTGAGGCCGATATTGAGAAAGACAGCTGGAAGTGTTGTCTACTGAACTTGGAAGAAATGTGTCAAGAGCATCTACAGAAGCGCAACGATACCAATGATAAAAAGCAAGATAACAAGCAGGCAGGTAAAGTTGAAAAGCATGTTGAATCTATGGAAAAAGTTACAACAAAAGAAAATGGAGCTGTTGATGGGGAGAAGTCCAAGGCAATATTAGAAAATGACTCTGTTAATGGTGACAATGCAAAATCCAAGAAGAAAAAGAAAAGCAAAAATGCTAATGATACATTTAATGATGTTAATGGAGAAACTCACTTGAAAGATTTGGAACAGACGACGCAGGATTCAAGTGTGCCTACTGAACCTGAGAAGAAATCCAAGAACAAGAAGAAGAAACGAAAGCATGAATCAGAGCATTTGGACAAGGATTTACAGGAAAAACAGGCTGAAGTAGCAGCAGGAGAAACAACTTCAGACAAAACTGATAAAATGTCTCAAGAGAAGAAAATAAAGGAGGATACTCCTATTCCTAAAGATGAGGTTGATAAGGAGAAGAAAAGTTCTAAAAAAAGAGAGAAGCGCTCATCTGATGACAATGAAGTTGACAATGTTGAAGCAACACCATTAGATGATTCCAAACGCAGGAAGACAGATGATCCATATCAGTCAAATGGCACTGAGCAAGCCACAAAAAGACCTACTGGAGTGGCCAATGGAGTCGTGGGTGAAGATGGAGGTGCAAAATCTAAAAAGCAGGAGAAAACAAAGGAACACAATGGTTCAGCTGAGCCAAGGACAACTGTTAACGCATTCCGAAGGGTGAAACCAGATGAAGTGGAATTTGTAGATGAGAGGCTTCAAGACAACTCCTACTGGGCCAAGGATGGTGCGGATTCCGGCTATGGTGCAAAAGCCCAGGAGGTGTTGGGGCAGGTTAGAGGAAGGGATTTTCGGCATGAGAAGACCAAGAAAAAGCGTGGCTCATACAGGGGAGGGCAAATTGATTTGCAGTCACATTCAGTGAAGTTCAATTACGATGATGATGATGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53192.p1 GENE.S_Transcript_53192~~S_Transcript_53192.p1 ORF type:complete len:457 (+),score=149.82,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|7.5e+03,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|1.6e+04,SRP40_C|PF05022.8|2.9e-29 S_Transcript_53192:192-1373(+)
MKKQIENNNKTPLSLTPENKLLLHQSICGYLQLNGFLKTLKKFTREADIEKDSWKCCLLNLEEMCQEHLQKRNDTNDKKQDNKQAGKVEKHVESMEKVTTKENGAVDGEKSKAILENDSVNGDNAKSKKKKKSKNANDTFNDVNGETHLKDLEQTTQDSSVPTEPEKKSKNKKKKRKHESEHLDKDLQEKQAEVAAGETTSDKTDKMSQEKKIKEDTPIPKDEVDKEKKSSKKREKRSSDDNEVDNVEATPLDDSKRRKTDDPYQSNGTEQATKRPTGVANGVVGEDGGAKSKKQEKTKEHNGSAEPRTTVNAFRRVKPDEVEFVDERLQDNSYWAKDGADSGYGAKAQEVLGQVRGRDFRHEKTKKKRGSYRGGQIDLQSHSVKFNYDDDDE*

Click here to download the sequence:
Link to NCBI Protein BLAST