Transcript Information: S_Transcript_53239.p1


Annotated TAIR IDAT5G58020.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF602 (InterPro:IPR006735); Has 385 Blast hits to 385 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 117; Plants - 50; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:23485585-23486649 | Forward length=354
E-Value2.8E-116
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.207429277246
Replicate 219.452682757184
Replicate 318.36040244037
Condition 2: 8 Hour
Replicate 119.94495210464
Replicate 218.22706418192
Replicate 321.12552753708
Condition 3: 24 Hour
Replicate 117.017554326378
Replicate 216.846092086883
Replicate 316.946061084687


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53239.p1 GENE.S_Transcript_53239~~S_Transcript_53239.p1 ORF type:complete len:448 (+),score=99.01,Rtf2|PF04641.8|4.6e-73,COX6B|PF02297.13|1.8e-06 S_Transcript_53239:106-1449(+)
ATGGAGGTTTACTCTTCGCAGAACGCTGATAAAGTCCATACGGATGTACTCTTCAATGCGAGACAGGCTTGTTACAAGGCAAGAGATGCATCATACGCATGCTTGGAGAGAGAATCGAACAAGAAAGCCACTGAAATCGCTTCTGTCGGCCTTCTTTACCCTTCCGAATGCAACAAGTCTAGGGCTGAATTTCAGAGACATTGTCGACCTTCATGTCAAAAGTTTCAAGTTTTCATCCGATATCCGGATCTTCTCCAGTCCCCAAATCGTATTCGTACCCTAACCCTAACCCTAGACGACGACGAGCAGAATCAAAACACCTTGGGAGAATTGAAGCAATCCCTTGTCCCTCCTGGACTAATATCCTTCTTCTACTTTACCCTGAATGGAAAAACCCTAGAAGATTCATCGACCGTGATGTCTTGTGGAATCCCATCCTTATCCACCCTAACCTTACAATTGAAGCTCCTGGGTGGCGGTGGAGATGGCGGGGCTACTGGTGCTGAGTCACGTGATTGCTACCTCAACATGTACGCCGAGAAGAAACCCGATAAGGTGGATCCTAACGAAAAGCGTCTTTCCAAGTGGACTAATTGTGCTTTGTCTTTTGAACCCTTAAAGCCTCCATGTGTTATTGACCGCCTTGGTAATGTCTTCAATAAGGAGGCCCTTGTTAAATCCCTCTTGTCCAAGTCTTTGCCCAAAGCTTTTAGTCATATCAAGGGTTTGAAGGATATGATCACAATTCATTTGTCTCTCAATCCTTCTAGTTCTATTGGGGCTCAGTTTCATTGTCCCGTTACTGGGTTGGAATTCAATGGTAAATACAAGTTTATTGCCCTGAACAAGTGTGGACATGTGTTGAGTGCCAAAGCCCTCAAGGAGGTCAAGTCTTGCGCTTGTCTTGTGTGTCACCAGGGTTTTGAGGAAGCTGATAAGATTGTCATCAATGGCACTGATGAGGAGGTGGCTTCCTTGAGAGAGAGGATGGAAGAGGAGAAAGCCCTTCAGCTCAAGCTCAAGGCTAATAAGAAGCCCAAGAAGGTGAAGGCAGTCAACGGTGGTGGAGAAGATGGTGTCAGCTTGGATTGTTCATCTCGGTTGACTGGCAAGAAGCATCATATCAATGTTAATGGGGTGGAGAAGCCTGCTGCCAAGCTCCAACCGGAACCTAATGGGAAGCCCACTGCTGATGCTCCTGCTTCTGCTAAGCGTTTTAAAGCAGTGGATAATGCCCCTCTTAATGCTAATAAGAAAGTCTATGCTTCTATTTTCACTTCTTCAAAGAAATCTGATTTCAAGGAGACCTTTACTTGCAGATCTCTACCTTTGGGTCGCAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53239.p1 GENE.S_Transcript_53239~~S_Transcript_53239.p1 ORF type:complete len:448 (+),score=99.01,Rtf2|PF04641.8|4.6e-73,COX6B|PF02297.13|1.8e-06 S_Transcript_53239:106-1449(+)
MEVYSSQNADKVHTDVLFNARQACYKARDASYACLERESNKKATEIASVGLLYPSECNKSRAEFQRHCRPSCQKFQVFIRYPDLLQSPNRIRTLTLTLDDDEQNQNTLGELKQSLVPPGLISFFYFTLNGKTLEDSSTVMSCGIPSLSTLTLQLKLLGGGGDGGATGAESRDCYLNMYAEKKPDKVDPNEKRLSKWTNCALSFEPLKPPCVIDRLGNVFNKEALVKSLLSKSLPKAFSHIKGLKDMITIHLSLNPSSSIGAQFHCPVTGLEFNGKYKFIALNKCGHVLSAKALKEVKSCACLVCHQGFEEADKIVINGTDEEVASLRERMEEEKALQLKLKANKKPKKVKAVNGGGEDGVSLDCSSRLTGKKHHINVNGVEKPAAKLQPEPNGKPTADAPASAKRFKAVDNAPLNANKKVYASIFTSSKKSDFKETFTCRSLPLGRN*

Click here to download the sequence:
Link to NCBI Protein BLAST