Transcript Information: S_Transcript_53462.p1


Annotated TAIR IDAT5G23340.1
Annotated Gene NameRNI-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:7856314-7857983 | Forward length=405
E-Value9.9E-214
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.629100864626
Replicate 217.387579389375
Replicate 315.851970776619
Condition 2: 8 Hour
Replicate 126.809062112967
Replicate 228.923604312789
Replicate 324.056456582765
Condition 3: 24 Hour
Replicate 119.244302122666
Replicate 217.429550331334
Replicate 314.953069183033


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53462.p1 GENE.S_Transcript_53462~~S_Transcript_53462.p1 ORF type:complete len:420 (+),score=67.22,LRR_4|PF12799.3|0.97,LRR_4|PF12799.3|0.36,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|0.00086,LRR_4|PF12799.3|3.5e+02,LRR_4|PF12799.3|7.1,LRR_4|PF12799.3|0.74,LRR_4|PF12799.3|1.7,LRR_6|PF13516.2|3.7e+02,LRR_6|PF13516.2|2.6e+02,LRR_6|PF13516.2|2.2,LRR_6|PF13516.2|46,LRR_6|PF13516.2|27,LRR_6|PF13516.2|0.009,LRR_6|PF13516.2|5.7,LRR_6|PF13516.2|8.5,LRR_6|PF13516.2|3.9e+03,LRR_6|PF13516.2|4.6,LRR_6|PF13516.2|2.8e+02,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|3.5e+03,LRR_1|PF00560.29|48,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|2.7e+03,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|1.4e+04,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|1.6e+03,LRR_1|PF00560.29|3.5e+02,LRR_1|PF00560.29|1.1e+02,LRR_1|PF00560.29|30 S_Transcript_53462:298-1557(+)
ATGACCATGACGATGATGAATGGAGACGGAGATGGAGAAGAAGTGGTATGCATAAACGAAATCCTTAGAGACGACGAACTTCAAGCAATACTAGCGAAGATAGAGAGCGACAAAGACAAGGAAGTGTTTGGATTGGTGTGCAAGAGATGGCTGTACCTGCAAAGCACAGAAAGGAAGAAGCTCTGTGCACGTGCTGGCCCACACATGCTTGGTAAAATGGCGGCTCGTTTTTCAAGGCTTCAGGAACTGGACCTTTCTCAGTCTCTTTCTAGATCCTTCTACCCAGGTGTCACTGATTCTGACCTCTCTGTTATTTCCTCCGGCTTCCCTTGCCTCCGTCTTCTCAACCTCCTCAACTGTAAAGGCATCACAAATGCTGGGTTGCTTTCTATAGCTAGCAATCTTCACTCTCTGCAGTCATTGGATGTATCATATTGCAGAAAATTGACGGACAAGGGCTTGTCTGCTGTGGCTCAGGGTTGTAATGACCTAAGAAGCTTGCATCTTGCTGGGTGCAAATTCATAACTGATTGTGTATTGAAAGCTCTTTCCGAATCTTGTCACAATCTAGAAGAGTTGGGTCTCCAAGGATGCACTAGGGTAACTGACTCTGGGCTTTCTGTTCTTGTAAGTGGATGTAAAAGGCTCACCTATTTAGATTTGAACAAGTGCACAAATGTAGGAGATAGTGGTGTGTCTAGTATTTCAGAAGCCTGTTCCGCGTCTCTAAGGACTCTGAAACTGCTGGATTGCTACAAAGTCGGAAATCAGGGTATCTCACACTTGGCCGAGTTCTGCAAGAGTCTAGAGACTCTAATTATAGGTGGCTGTCGCGACATCTCTGACAAGTCGCTGAAATCATTAGCTGTTTCCTGTAATGGCAGCCTGAAGAACCTCCGGATGGATTGGTGTTTGAGCATCACCGACTCTTCTCTGAGTTGCATTCTTTCGCACTGCAAGAATTTAGAAGCCCTCGACATAGGATGCTGTGAAGAAGTGACTGATGCTGCTTTCCAGAGTTTAGGCACTGGAGAAGATTATGCAGCAAATTTGAAGGTCTTGAAGGTCAGTAACTGCCCAAAGATCACAGTGGCAGGATTAGCTTTTGTCCTGGATGCCTGCAAACTCTTAGAATACCTTGATGTCAGGTCTTGCCCACATATCTCGAAGGCTGGTCTTGATGAAGCTGGCCTTCAACCCCCTCAAACTTGTAAGGTGAATTTTAACGGGAGCTTGACAGAGCCAGATGTATTGCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53462.p1 GENE.S_Transcript_53462~~S_Transcript_53462.p1 ORF type:complete len:420 (+),score=67.22,LRR_4|PF12799.3|0.97,LRR_4|PF12799.3|0.36,LRR_4|PF12799.3|0.022,LRR_4|PF12799.3|0.00086,LRR_4|PF12799.3|3.5e+02,LRR_4|PF12799.3|7.1,LRR_4|PF12799.3|0.74,LRR_4|PF12799.3|1.7,LRR_6|PF13516.2|3.7e+02,LRR_6|PF13516.2|2.6e+02,LRR_6|PF13516.2|2.2,LRR_6|PF13516.2|46,LRR_6|PF13516.2|27,LRR_6|PF13516.2|0.009,LRR_6|PF13516.2|5.7,LRR_6|PF13516.2|8.5,LRR_6|PF13516.2|3.9e+03,LRR_6|PF13516.2|4.6,LRR_6|PF13516.2|2.8e+02,LRR_1|PF00560.29|2.3e+02,LRR_1|PF00560.29|3.5e+03,LRR_1|PF00560.29|48,LRR_1|PF00560.29|1e+02,LRR_1|PF00560.29|2.7e+03,LRR_1|PF00560.29|1.7e+02,LRR_1|PF00560.29|1.4e+04,LRR_1|PF00560.29|2.5e+02,LRR_1|PF00560.29|1.6e+03,LRR_1|PF00560.29|3.5e+02,LRR_1|PF00560.29|1.1e+02,LRR_1|PF00560.29|30 S_Transcript_53462:298-1557(+)
MTMTMMNGDGDGEEVVCINEILRDDELQAILAKIESDKDKEVFGLVCKRWLYLQSTERKKLCARAGPHMLGKMAARFSRLQELDLSQSLSRSFYPGVTDSDLSVISSGFPCLRLLNLLNCKGITNAGLLSIASNLHSLQSLDVSYCRKLTDKGLSAVAQGCNDLRSLHLAGCKFITDCVLKALSESCHNLEELGLQGCTRVTDSGLSVLVSGCKRLTYLDLNKCTNVGDSGVSSISEACSASLRTLKLLDCYKVGNQGISHLAEFCKSLETLIIGGCRDISDKSLKSLAVSCNGSLKNLRMDWCLSITDSSLSCILSHCKNLEALDIGCCEEVTDAAFQSLGTGEDYAANLKVLKVSNCPKITVAGLAFVLDACKLLEYLDVRSCPHISKAGLDEAGLQPPQTCKVNFNGSLTEPDVLL*

Click here to download the sequence:
Link to NCBI Protein BLAST