Transcript Information: S_Transcript_53540.p1


Annotated TAIR IDAT1G48790.1
Annotated Gene Nameassociated molecule with the SH3 domain of STAM 1
Annotated Gene Symbol(s)AMSH1
Annotation TypeOrtholog
Chromosome Positionchr1:18043925-18047427 | Reverse length=507
E-Value2E-207
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.688208899338
Replicate 218.242578914287
Replicate 319.160352273624
Condition 2: 8 Hour
Replicate 131.531705527278
Replicate 230.728648131609
Replicate 329.817304334594
Condition 3: 24 Hour
Replicate 121.759883943938
Replicate 217.63720745241
Replicate 319.480839744808


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53540.p1 GENE.S_Transcript_53540~~S_Transcript_53540.p1 ORF type:complete len:514 (+),score=81.05,JAB|PF01398.17|7.4e+03,JAB|PF01398.17|3.7e-17,USP8_dimer|PF08969.7|7.8e-11,Prok-JAB|PF14464.2|5e-06 S_Transcript_53540:229-1770(+)
ATGAGGCCATCCTCTAGGCGTATTGACATTGGCGCTATTGCTCAGAAACTCGATGTCGATCATCGTTTTTCTCTCCGTATCTACTTTCGGATTGCCGACAATATCCTCAGACAGGCTGCTATCTTTCGGAATGAGAAGAATGTTATCGATCTTTATGTTATGCTTCTAAGATTTTCGAGTCTGGTATCTGAGACTATTCCACGGCATCGAGATTATGCGGCCTCACCACAGAGCAAACGAAGTTCTTTAAGAAAGCAATTGTTACTTGCTTTGAATGAACTAGAGACATTGAAGCCTGCTGTTAAGAAGAAAGTTGAAGAACTGGAAAGAAAACCTGCATACCAAGCAATTGGATGGAACCAGAACTACCATCACAATGAGAATCATTCTCTAGGGTCCTCCATTGAATGGCCTGCCAGTAACATGTGGTCTTCAACGAATAATAAATTAACTAAGGCATCATGGAAAATTTCAGGGGATTTGCCTAGTGCTCAGCACAAATTGAATGGTGTGCCTGTGGATGAGACATTTCGCAGACTATCCCTAAACTTCCCTCGTCCAAAGGAGGAAACTCTGTCGAAACATTCTATTCTGGGGCCAAAAGGACTTTCTGGGCAATGGCATCCACCTGTCAATAGAAAAGGGGTCCGGTACCCTAGTGATATTGATCTGACTCCTGTTGAGATCCCGAGGATCCAAGAAGTGGTGAGTGGTGAAGATGAAGTAGCAGTAAGAAAAGATGATAGCACCTTGGATTCTGAAAAGCCAAGATTGGAGCAGATCGTTGAACGTAATGAAGATAGTCAGAAGCCACAAACTAATGAGCAGCCCATGATTTCCTTTGAATGTTCTGATCCACCAGATACAGTTATCTGTAAGCAACCTACCCCTCCAGCTATACTTGCAGAGGTCCATGACCTGGTTCCTGCAGACGCTGCTGTAGCTATGGAGAAACAAGATGTACCAGATAGTTCTCTGCAAGATGGTTTGCTTCGTCAGGAATCACCTATGGAGCTACATATCTCAACTAGTATGATGGATACCTTCATGAAGCTGGCGAAATCTAACACTGTTAAAAATTTGGAAACATGTGGAATTCTTGCCGGTTCACTTAAGAACAGGAAGTTCTATATTACAGCTTTGATAATTCCAAAGCAAGAGTCAACCTCAGATTCTTGTCAGGCCACAAATGAGGAGGAGATTTTTGAAGTGCAGGACAAACGATCCCTTTTTCCATTGGGATGGATTCATACTCATCCCACACAATCTTGTTTCATGTCATCAATCGATGTCCACACTCATTACTCATATCAGGTCATGTTACCTGAAGCAGTCGCAATAGTTATGGCGCCAAGGGATAATAGCAAAAACCATGGCATTTTCCGCTTGACGACTCCTGGAGGCATGTCAGTCATTAGAAATTGTGAACGCCGTGGATTTCATCATCATGAACCACCCGTTGATGGTGGGCCCATATACAGTCAGTGTACAGATGTATATATGAACCCCAAGCTGAAATTTGATGTTATAGACCTTAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53540.p1 GENE.S_Transcript_53540~~S_Transcript_53540.p1 ORF type:complete len:514 (+),score=81.05,JAB|PF01398.17|7.4e+03,JAB|PF01398.17|3.7e-17,USP8_dimer|PF08969.7|7.8e-11,Prok-JAB|PF14464.2|5e-06 S_Transcript_53540:229-1770(+)
MRPSSRRIDIGAIAQKLDVDHRFSLRIYFRIADNILRQAAIFRNEKNVIDLYVMLLRFSSLVSETIPRHRDYAASPQSKRSSLRKQLLLALNELETLKPAVKKKVEELERKPAYQAIGWNQNYHHNENHSLGSSIEWPASNMWSSTNNKLTKASWKISGDLPSAQHKLNGVPVDETFRRLSLNFPRPKEETLSKHSILGPKGLSGQWHPPVNRKGVRYPSDIDLTPVEIPRIQEVVSGEDEVAVRKDDSTLDSEKPRLEQIVERNEDSQKPQTNEQPMISFECSDPPDTVICKQPTPPAILAEVHDLVPADAAVAMEKQDVPDSSLQDGLLRQESPMELHISTSMMDTFMKLAKSNTVKNLETCGILAGSLKNRKFYITALIIPKQESTSDSCQATNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDVHTHYSYQVMLPEAVAIVMAPRDNSKNHGIFRLTTPGGMSVIRNCERRGFHHHEPPVDGGPIYSQCTDVYMNPKLKFDVIDLR*

Click here to download the sequence:
Link to NCBI Protein BLAST