Transcript Information: S_Transcript_53606.p1


Annotated TAIR IDAT3G46960.1
Annotated Gene NameRNA helicase, ATP-dependent, SK12/DOB1 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:17291004-17298067 | Reverse length=1347
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.408964709126
Replicate 28.3206362993449
Replicate 39.4335895780258
Condition 2: 8 Hour
Replicate 19.9265179872624
Replicate 210.480056786687
Replicate 310.808258288198
Condition 3: 24 Hour
Replicate 18.9682409579054
Replicate 27.2180958917988
Replicate 38.2762758923989


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53606.p1 GENE.S_Transcript_53606~~S_Transcript_53606.p1 ORF type:complete len:1347 (+),score=340.69,DSHCT|PF08148.8|3.2e-51,rRNA_proc-arch|PF13234.2|2.1e+03,rRNA_proc-arch|PF13234.2|8.4e+03,rRNA_proc-arch|PF13234.2|1.2e-40,DEAD|PF00270.25|2.1e-14,Helicase_C|PF00271.27|1.1e-06 S_Transcript_53606:166-4206(+)
ATGGATCGATTACCAGCAGGAAACGAGTTATCATTTCGGGTCGGGCTAACGGGTCACAGCGGTCATCTCTACGTCGAACCCCTTCCCCCAATCGAAGGCGACGACAATCCTCTTCGTGACCTCCCGGATTTTGTTCTCCCACCTGCCTTTCCGAGGGAGACTAGAGAATCTATCATAGAATATATAGAAGAAAAGTATCTTACTCCTAAATTGGACCCTGATGAGTTCTCTGTTGAGAAGGCTGGAAGGGACTGGGATTTTGACTGGTTTGGCAAGGCCAAAATACCCATTGATCCATCATTACCTCGATCAGCTGTGGTTCCTGCTTGGGAATTACCATTTAGGCGTTCACATGGACAAGAGGAAGCAATCTGGGAGCCCCAATCCGTGGAGGTAGAGATGTCAGAATTAACTGCAGGAGCAGAGGAATCTGGTGCTTTGCCGCGAATTACTGGACCTTCAAAGGATTTTGTCAGGGGGAGCATTAACAATCGGCCTTTTCGTCCAGGAGGTTTAGATGGATCTCAGTCTTTACCCAAGGTTGTTCCTGAGGGTGCTTTGAATGGTCAATGGATACACGAGGTTCTTAATGGTGGTCCTGCTGAAAAAATTCCTCCCAGCTTTAAGCAAGGATTGGATCTTGGTGATCTCAAGGCATTTCCTTGTTCGTGGAATGTTGCTAAGGGCCAAGTTTCTTCAACAGGTATATTGGATGAAGAGAAGAGCAAATTGTCTTTGCAGTTTGATGATTTGTTCAAGAGAGCATGGGAAGATGATTTTGCTGCAAGGGATGAGGCTGGCGAACATAAATCAGAAGTAGAGAACATTGAATCAGAAATCGAAGTGGTTAATGCTGAAGCCAACAAGGATATTCCAAATGTTAGATCATCTGAAATTGATGAAATTTTGTCAGTTGATTCAGTAGAACCAGAGTTGAAGATGGATGGAAAGAATGAGGAAGGTGGGAAGCAGCAAAAAGAGTCTTGGGCTATCCGTGGAGTTAATGAGCGTATTGCAGACCGTTTTTATGAACTTGTTCCTGACTTGGCACTAGAGTTTCCATTTGAATTGGATTCATTCCAAAAGGAGGCTATCTATTATCTTGAACAAGGGGAGTCTGTTTTTGTGGCAGCTCATACATCAGCTGGAAAGACAGTTGTTGCGGAGTACGCATTTGCATTGGCTTCAAAACATTGCACCAGAGCTGTATATACAGCTCCAATAAAGACAATCAGCAACCAAAAATACAGAGATTTCTCTGGGAAATTTGACGTGGGTCTTCTAACTGGCGATATCAGCTTGAGGCCAGAGGCGTCTTGTCTCATCATGACTACTGAGATATTGAGGTCAATGCTGTACAGAGGTGCTGATATTATACGTGACATTGAATGGGTCATCTTTGACGAAGTGCACTATGTTAATGATGCTGAAAGAGGTGTTGTTTGGGAGGAAGTTATTATAATGCTTCCACGTCACATCAATTTTGTTCTTCTTTCTGCTACAGTTCCAAATACAATAGAATTTGCTGACTGGATAGGTAGAACAAAACAAAAGACTATTCGTGTTACTGGGACCACCAAAAGACCTGTCCCCTTGGAGCACTGCCTGTTTTACTCTGGAGAACTTTATAGGATTTGTGAGAATGAAATTTTTATACCTCAGGGTCTGAAAGCTGCTAAAGAAGCATACAAGAAAAAGAATTCCAGTACAGTCAGAAGTGGCCCTGCAATGGGTTCTGGTGGAGCTCATGCTCAAAATCGTGAACAAGCTCATCGTGGAAAACAGAAGCATCCTGTGTCCCATCATTCTGGAAATTTAAATGCGAATGCTTCGGGGAACTTTATGAATGGAAACCAGAATAATTTCAGCTTGAGACGATCTGATGCTTCTTTGTGGTTGCAATTAGTGAACAAACTGTCAAAAAAATCACTTTTGCCTGTTATCGTATTTTGTTTTTCAAAGAATCGTTGTGATCGATCAGCTGATAGTATGACAAGTATGGACCTTACAAGTAGTTCAGAGAAGAGTGAAATTCGCATTTTCTGTGACAAAGCCTTTTCACGTCTGAAGGGGTCTGATCGAAATCTACCTCAGATTCTTAGAGTTCAAAGTCTTCTTCGTAGAGGAATTGGTGTACATCACGCTGGTTTGCTCCCGATTGTGAAAGAAGTAATTGAAATGCTTTTCTGCCGTGGTGTAATCAAGGTGCTGTTTTCTACTGAGACATTTGCTATGGGGGTCAATGCTCCTGCCAGAACGGTGGTTTTTGATACTTTAAGAAAATTCGATGGGAAGGAATTCAGGCAGATAATTCCTGGAGAATATACTCAAATGGCTGGTCGTGCTGGCAGAAGAGGGCTTGATAAATTTGGTACCGTTATTATAATGTGCCGTGATGAAATTCCTGAAGAAAGAGATATGAAACATGTCATCATTGGACATCCCACGAGACTTGAATCCCAGTTCCGGCTAACATATATTATGATTCTGCATCTACTTCGTGTTGAAGAATTGAAGGTGGAAGATATGCTAAAGAGAAGTTTTGCTGAATTTCATGCCCAGAAGAAACTTCCTGAAAAGCAACAACTTCTGATGCGAAAGCTTGCACAGCCTACGAAAACGATAGATTGCATAAAGGGGGAGCCGTCAATTGAGGAATACTATGAAATGCATGTAGAGGCTGAGGAATATTTGAACCAGATAACGGAGGTCATCATGCAATCTCATGCTGCGCAGCAATTTCTGGTGCCTGGGAGAGTGGTGGTGGTTAAATCTCAGTCGTCTCAGGACCATTTACTTGGTGTGGTAGTGAAAGCACCTTCAGCAAACATAAAAAAGTACATAATTTTGGTGGTGAAACCTGATTTACCTCCAGTACTGCAATCATCCTCAGGCAGTGGTGCAATCCTTGAAAAAGGGGCTAAGAAATCTGAAGAAGGCTTTTTTGTACTGCCCAAGGGGAAACGTGCATTAGATGATGAATATTATTCCGCTGTCACTGCTCGCAAGGGTTCTGGTGTAATCAACATAAAATTGCCTTACAGTGGGGTGGCTTCTGGTGCTAGCTATGAGGTCAGAGAAGTGGATAATAAAGAGTTCCTTTGCATCTGCAATTGCAAAATAAAGATTGATCAAGTTCGGCTTCTTGAAGATGTCAGCACTGCTGCCTATTCAAAAACAGTTCTGCAGCTTTTGGATCTGAAGTCCAAGGGAAATAAATATCCCCCAGCTTTGGATCCTTTGAAGGATCTGAAGCTGAAGGATGTCAATCTTGTGGAAGCTTACAACAAATGGAACTCGTTGTTGGAAAAGATGGCAGAGAACAAGTGTCATGGATGTATAAAGTTGGATGAACATATGAAGTTAGTCAAAGAAATTTTCAAGCATAGAGCAGAAGTCAATGAATTGAGGTTTGAAATGTCTGATGAAGCACTACAACAGATGCCGGACTTTCAGGGCCGGATAGATGTTCTCAAGGCAATTGGCTGTTTAGACGATGACCTTGTTGTTCAAATAAAAGGACGTGTAGCTTGTGAAATGAATTCTGGAGAAGAGCTGATATGCACTGAGTGTTTGTTTGAGAACCAATTAGAGGACCTGGAACCAGAAGAAACAGTTGCACTAATGTCTGCATTTGTATTTCAGCAGAAGAATACCTCAAATCCTTCTCTCACCCCAAAGTTATCTGGGGCTGTACGGAGATTATATGATACAGCCATCAGACTTGGGCAGCTGCAGGCAGAGTTTAAGCTCCCAATAAGTCCTGAGGAGTATGCTCAAGAAAATCTCAAGTTTGGTCTTGTAGAAGTGGTTTATGAATGGGCAAAGGGCACAGAATTTGCTGATATTTGTGAGCTAACTGATGTTCCGGAAGGTTTGATAGTGAGGACCATTGTCCGTCTTGATGAAACGTGTCGAGAATTTAAAAATGCTGCAGCTATTATGGGAAACTCAGCACTGTACAAGAAGATGGAAGCTGCTTCAAATGCTATAAAACGTGATATTGTTTTTGCAGCAAGCTTGTACATCACAGGTGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53606.p1 GENE.S_Transcript_53606~~S_Transcript_53606.p1 ORF type:complete len:1347 (+),score=340.69,DSHCT|PF08148.8|3.2e-51,rRNA_proc-arch|PF13234.2|2.1e+03,rRNA_proc-arch|PF13234.2|8.4e+03,rRNA_proc-arch|PF13234.2|1.2e-40,DEAD|PF00270.25|2.1e-14,Helicase_C|PF00271.27|1.1e-06 S_Transcript_53606:166-4206(+)
MDRLPAGNELSFRVGLTGHSGHLYVEPLPPIEGDDNPLRDLPDFVLPPAFPRETRESIIEYIEEKYLTPKLDPDEFSVEKAGRDWDFDWFGKAKIPIDPSLPRSAVVPAWELPFRRSHGQEEAIWEPQSVEVEMSELTAGAEESGALPRITGPSKDFVRGSINNRPFRPGGLDGSQSLPKVVPEGALNGQWIHEVLNGGPAEKIPPSFKQGLDLGDLKAFPCSWNVAKGQVSSTGILDEEKSKLSLQFDDLFKRAWEDDFAARDEAGEHKSEVENIESEIEVVNAEANKDIPNVRSSEIDEILSVDSVEPELKMDGKNEEGGKQQKESWAIRGVNERIADRFYELVPDLALEFPFELDSFQKEAIYYLEQGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFSGKFDVGLLTGDISLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPRHINFVLLSATVPNTIEFADWIGRTKQKTIRVTGTTKRPVPLEHCLFYSGELYRICENEIFIPQGLKAAKEAYKKKNSSTVRSGPAMGSGGAHAQNREQAHRGKQKHPVSHHSGNLNANASGNFMNGNQNNFSLRRSDASLWLQLVNKLSKKSLLPVIVFCFSKNRCDRSADSMTSMDLTSSSEKSEIRIFCDKAFSRLKGSDRNLPQILRVQSLLRRGIGVHHAGLLPIVKEVIEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQIIPGEYTQMAGRAGRRGLDKFGTVIIMCRDEIPEERDMKHVIIGHPTRLESQFRLTYIMILHLLRVEELKVEDMLKRSFAEFHAQKKLPEKQQLLMRKLAQPTKTIDCIKGEPSIEEYYEMHVEAEEYLNQITEVIMQSHAAQQFLVPGRVVVVKSQSSQDHLLGVVVKAPSANIKKYIILVVKPDLPPVLQSSSGSGAILEKGAKKSEEGFFVLPKGKRALDDEYYSAVTARKGSGVINIKLPYSGVASGASYEVREVDNKEFLCICNCKIKIDQVRLLEDVSTAAYSKTVLQLLDLKSKGNKYPPALDPLKDLKLKDVNLVEAYNKWNSLLEKMAENKCHGCIKLDEHMKLVKEIFKHRAEVNELRFEMSDEALQQMPDFQGRIDVLKAIGCLDDDLVVQIKGRVACEMNSGEELICTECLFENQLEDLEPEETVALMSAFVFQQKNTSNPSLTPKLSGAVRRLYDTAIRLGQLQAEFKLPISPEEYAQENLKFGLVEVVYEWAKGTEFADICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSALYKKMEAASNAIKRDIVFAASLYITGV*

Click here to download the sequence:
Link to NCBI Protein BLAST