Transcript Information: S_Transcript_5386.p1


Annotated TAIR IDAT5G54490.1
Annotated Gene Namepinoid-binding protein 1
Annotated Gene Symbol(s)PBP1
Annotation TypeOrtholog
Chromosome Positionchr5:22121458-22121841 | Forward length=127
E-Value3.5E-44
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 153.896918467887
Replicate 235.967909026537
Replicate 326.811708760192
Condition 2: 8 Hour
Replicate 138.34986157871
Replicate 226.31982192909
Replicate 345.318566756809
Condition 3: 24 Hour
Replicate 127.168426526117
Replicate 232.376873680496
Replicate 350.656038763216


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5386.p1 GENE.S_Transcript_5386~~S_Transcript_5386.p1 ORF type:complete len:119 (+),score=35.17,EF-hand_8|PF13833.2|4.7e+02,EF-hand_8|PF13833.2|2.4e-16 S_Transcript_5386:83-439(+)
ATGGCAAACAAGAGTACTAGAAAGAACAATGGGGTCGTTTTCGAAGATTTCTTCCCAGCTATGGTGGCCAAGCTTGGAGCAGAAGGGTTCATGGAGGAGCTATGCAAAGGGTTTCAGTTGCTAATGGATGAAGAGAAGGGAGTTATAACGTTTCAGAGCTTAAAAAGGAACTCAAAACTCTTAGGGTTGGGGGATATGAGTGAGGAAGAATTGAAGGGAATGTTGAGAGAAGGAGATGTAGATGGAGATGGGTGTTTGAGCCAAATGGAGTTTTGTGTTTTGATGTTTAGGTTGAGCCCTGGCTTGATGGAAGCTTCTAGGATGTGGCTTCAACAAGCTCTTTGTTGTGCTGATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5386.p1 GENE.S_Transcript_5386~~S_Transcript_5386.p1 ORF type:complete len:119 (+),score=35.17,EF-hand_8|PF13833.2|4.7e+02,EF-hand_8|PF13833.2|2.4e-16 S_Transcript_5386:83-439(+)
MANKSTRKNNGVVFEDFFPAMVAKLGAEGFMEELCKGFQLLMDEEKGVITFQSLKRNSKLLGLGDMSEEELKGMLREGDVDGDGCLSQMEFCVLMFRLSPGLMEASRMWLQQALCCAD*

Click here to download the sequence:
Link to NCBI Protein BLAST