Transcript Information: S_Transcript_5387.p1


Annotated TAIR IDAT5G54490.1
Annotated Gene Namepinoid-binding protein 1
Annotated Gene Symbol(s)PBP1
Annotation TypeOrtholog
Chromosome Positionchr5:22121458-22121841 | Forward length=127
E-Value3.5E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.722714089903
Replicate 27.2828625723835
Replicate 34.2973365631691
Condition 2: 8 Hour
Replicate 16.3148000453646
Replicate 25.7558639704151
Replicate 36.8293492326639
Condition 3: 24 Hour
Replicate 12.969207464741
Replicate 25.2808881342945
Replicate 38.9379089396771


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5387.p1 GENE.S_Transcript_5387~~S_Transcript_5387.p1 ORF type:5prime_partial len:206 (+),score=28.72,EF-hand_8|PF13833.2|2.2e+03,EF-hand_8|PF13833.2|2.7e-15 S_Transcript_5387:2-619(+)
AATATGCAACTTCGAGGAAAGCAACGTTACAAATTAAAGCACAAAAATGCATTAATCGAAACAACACTTGTTTTTAACTTATCTGTACCTTCGTTGGCATTTGATCTCTTTCCTCGAACACTTCCTCTCTTTTCCTTCTTCATCACCCTATATTATTTCTCTCAATCTCTTCCTCTATATATATATTCCTACAAAACTTTAATTATACAAGTGATCATAATACATACTATTTCATATCTTCGATCATACTATATTAATATGGAGGCAAATTACAAGAGTATAAGCATCAATGGGGTCGTTTTCGAGGATTTCTTCCCAGCTATGGTGGCCAAGCTTGGAGCAGAAGGGTTCATGGAGGAGCTATGCAAAGGATTTCGGTTGCTAATGGATGAAGAGAAGGGAGTTATAACGTTTCAGAGCTTGAAAAGGAACTCAAAACACTTAGGGTTGGGGGATATGAGTGAGGAAGAATTGAAGGGAATGTTGAGAGAAGGAGATGTAGATGGAGATGGGTGTTTGAGCCAAATGGAGTTTTGTGTTTTGATGTTTAGGTTGAGCCCTGGCTTGATGGAAGCTTCTAGGATGTGGCTTCAACAAGCTCTTTGTTGTGCTAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5387.p1 GENE.S_Transcript_5387~~S_Transcript_5387.p1 ORF type:5prime_partial len:206 (+),score=28.72,EF-hand_8|PF13833.2|2.2e+03,EF-hand_8|PF13833.2|2.7e-15 S_Transcript_5387:2-619(+)
NMQLRGKQRYKLKHKNALIETTLVFNLSVPSLAFDLFPRTLPLFSFFITLYYFSQSLPLYIYSYKTLIIQVIIIHTISYLRSYYINMEANYKSISINGVVFEDFFPAMVAKLGAEGFMEELCKGFRLLMDEEKGVITFQSLKRNSKHLGLGDMSEEELKGMLREGDVDGDGCLSQMEFCVLMFRLSPGLMEASRMWLQQALCCAN*

Click here to download the sequence:
Link to NCBI Protein BLAST