Transcript Information: S_Transcript_53995.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value2E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.2238242917387
Replicate 28.6914019468998
Replicate 39.1864386173995
Condition 2: 8 Hour
Replicate 16.2602945059765
Replicate 27.669137507179
Replicate 36.8226860705338
Condition 3: 24 Hour
Replicate 16.2886785806256
Replicate 29.4432548234781
Replicate 38.5984242290168


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_53995.p1 GENE.S_Transcript_53995~~S_Transcript_53995.p1 ORF type:complete len:528 (+),score=78.41,zf-RING_2|PF13639.2|4.6e-09,zf-RING_2|PF13639.2|6.1e+03,zf-rbx1|PF12678.3|8e-08,zf-RING_5|PF14634.2|3.4e+03,zf-RING_5|PF14634.2|1.9e-06,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|2.2e-06,zf-RING_11|PF17123.1|4.2e+03,zf-RING_11|PF17123.1|4.5e+03,zf-C3HC4|PF00097.21|7.1e+03,zf-C3HC4|PF00097.21|8.5e-06 S_Transcript_53995:239-1822(+)
ATGGGTGGAAATGGAGGAGCTTCATCAAAGCTCAAAAGGGTAGCCAAGAAATTCATCTTACTTCCATGTACCTCTTTGTGCTCTACCCGTCTTGTAGACTCCACAACCACTGCCAACGGCTGTGCCTCTCCTTCTAATTTGAGTGAAGAACCAGAAATGCCTTCACCTCTAAGGCAAGGATTGAATTTTATGTCAGAGATTGTAGTGGAAGGAGATTATGCAGCTAATATCTCCTCTAAGAATTTGTGCGCTATATGCCTTGAACAGTTACTAAACGGCGCATCATCAAGTCCTGGCAAAGCAATATTCACATCCCAGTGCTCTCACTCATTCCACCTGTCATGCATCTCATCGAATATCCGCCATGGCAGCATAACGTGCCCTATTTGTCGTGCACAATGGACCCGCCTACCCCACACCTTGCATCCACCTTGTTGGCTCTCCCGCAATCAAGATGATCCGATCATCCGCATCCTTGATGATTCCATCAGCTCATTCCGTGTCCACAGGCGGTCTTTTCTTCGCACTGCTCGTTACAATGACGATGATCCTGTGGAGCCCGAAGTCCATTCCCCTTGCCACCCTCGTCTTTGCCTCAATTTGATACCGTTGGATGTTGCACAAACGCCATCACCTTCGAACTTCTGCTCGTGCGTGCAACATCCTTCTCCGAATTCATATCTTTTTCCACGAATCAACATGCATGAGCACTTGAATGGTTCGCTCTCACCCTGGTATAAACGCAAACGAGGAGCATATTTATCCGTAAGACTGGCTCCACAGCAAGCCATTGACTTGGTATTGGTTGCCAGCCCAAATGGTCCACACTTGAGGCTTCTTAAGCAATCCATGGCATTAGTAGTATTCTCCTTACGGCCAGCTGATCGGTTGGCTATTGTGAGTTACTCATCATCAGCAGCTCGGATCTTCCCACTTCGCCGGATGACGTCCTATGGTAAACGCGCTGCTCTTCAGGTCATTGATCGGCTTTTCTATGCTGGGCATGCTGATCCCGTTGAAGGTATTAAAAAAGGGGTTAAGATTCTCAAGGACCGTACTCATGTGAACCCGCATTCCTCCATTCTTCACTTGTCTGATTATCCTACAACTAGTCGATCTTACAGGACCATCAATGACATGGACATTGGTATTCCTGTCTCTGTTCATCAGTTTCATGTGGCGTCAACTGGCTCCATAATGCATGAACTTGAGGAGTTCTTGGGGCAGCTGTTGGGTGGTGTTGTCCAGGAAGTGCAGTTGAGAATTGGAGATCAGGAGGATGGCAGAATTGTGAGGCTCGGGGAGCTTAGAGGCGATGAAGAGAGAAGAGTAATCTTAGAGGTCGATGAGGCTCATGATCATATCTGTGTGGGCTACAGCTATGTGGAGGGTGGTATTGGGGTTGATGAACATATCGAAGTAGGAGAAGTTGTGGTGGGCATTAGCGGTGGGGGGGAGATCGAGGATAGTGCAGAAGCTGCCATTACTGGTGGAAGGGCAAGCTGTGTTGACAGTTGGGATTACCATGACCCTTACATGGCTAGGAGATGGGCTAAGAGACTGCATGGAAGACACAGGATATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_53995.p1 GENE.S_Transcript_53995~~S_Transcript_53995.p1 ORF type:complete len:528 (+),score=78.41,zf-RING_2|PF13639.2|4.6e-09,zf-RING_2|PF13639.2|6.1e+03,zf-rbx1|PF12678.3|8e-08,zf-RING_5|PF14634.2|3.4e+03,zf-RING_5|PF14634.2|1.9e-06,zf-RING_11|PF17123.1|6.2e+03,zf-RING_11|PF17123.1|2.2e-06,zf-RING_11|PF17123.1|4.2e+03,zf-RING_11|PF17123.1|4.5e+03,zf-C3HC4|PF00097.21|7.1e+03,zf-C3HC4|PF00097.21|8.5e-06 S_Transcript_53995:239-1822(+)
MGGNGGASSKLKRVAKKFILLPCTSLCSTRLVDSTTTANGCASPSNLSEEPEMPSPLRQGLNFMSEIVVEGDYAANISSKNLCAICLEQLLNGASSSPGKAIFTSQCSHSFHLSCISSNIRHGSITCPICRAQWTRLPHTLHPPCWLSRNQDDPIIRILDDSISSFRVHRRSFLRTARYNDDDPVEPEVHSPCHPRLCLNLIPLDVAQTPSPSNFCSCVQHPSPNSYLFPRINMHEHLNGSLSPWYKRKRGAYLSVRLAPQQAIDLVLVASPNGPHLRLLKQSMALVVFSLRPADRLAIVSYSSSAARIFPLRRMTSYGKRAALQVIDRLFYAGHADPVEGIKKGVKILKDRTHVNPHSSILHLSDYPTTSRSYRTINDMDIGIPVSVHQFHVASTGSIMHELEEFLGQLLGGVVQEVQLRIGDQEDGRIVRLGELRGDEERRVILEVDEAHDHICVGYSYVEGGIGVDEHIEVGEVVVGISGGGEIEDSAEAAITGGRASCVDSWDYHDPYMARRWAKRLHGRHRI*

Click here to download the sequence:
Link to NCBI Protein BLAST