Transcript Information: S_Transcript_54047.p1


Annotated TAIR IDAT3G15430.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:5209408-5211562 | Forward length=488
E-Value4.9E-256
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.176116790086
Replicate 225.067275127339
Replicate 321.329099251156
Condition 2: 8 Hour
Replicate 118.81142153991
Replicate 216.960771428085
Replicate 318.5863793141
Condition 3: 24 Hour
Replicate 122.022484169379
Replicate 221.327936503758
Replicate 322.453771238701


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54047.p1 GENE.S_Transcript_54047~~S_Transcript_54047.p1 ORF type:complete len:492 (+),score=96.47,RCC1|PF00415.14|4.8e+02,RCC1|PF00415.14|0.00031,RCC1|PF00415.14|4.3e-07,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.2e-10,RCC1|PF00415.14|1.6e-08,RCC1|PF00415.14|1.3e-05,RCC1|PF00415.14|0.0028,RCC1_2|PF13540.2|0.061,RCC1_2|PF13540.2|2.6e-05,RCC1_2|PF13540.2|1.3e-07,RCC1_2|PF13540.2|1.1e-06,RCC1_2|PF13540.2|4.2e-05,RCC1_2|PF13540.2|1.1,RCC1_2|PF13540.2|2e-06 S_Transcript_54047:576-2051(+)
ATGGGTTTTAAAATTGATGAGTTGCCCTCACATTTGGTGTTGGAGATATTGACTTCAGGTAGATTGAGTGCTGTTGATCTGGTGTGTGTTGAATTATCTTCATCAAGTATATTTGGGGGTTTGAATAATCAAGGGCTTTTGTTTCCTTTGAAATTCAAGTCATTAGTGGATTTAGCAGCTTATCAGCTATGTGGGTCTCATCCCATTTATGGTTCCTTGAGTTTGGAAGCTCAAAAAGCTCTCTTTGATCGGTGTCATGGGAATTGGAAAAGGGTTTTGAGGTTCTTACAGTCTGTTGAACAAGCTTCTGACATTGTTGAGACCTCTTCCGGCAATATGCAGATAAAGGCAGGCAGGTATCACACTTTGCTTGTCAGCAATTCATCAGTTTACTCTTGTGGATCCAGCTTTTGCGGTGTTCTTGGCCATGGTTCGGAAACGACACAGTGTGTATCATTTAGCCGGATCATTTTCCCTTCTTTCTCTCCTGTTGTCCAAGTTTCTGCTTCACACAATCATGCCGCTTTTGTCACGCAGTCTGGAGAGGTCTTCACTTGCGGAGACAATTCCTCTTTTTGCTGTGGACATAAAGATACAGGTCGACCTATTTTCCGGCCTAGACTTGTTGAGGCACTAAATGGTATTCCCTGTAAGCAGGTTGCTGCGGGACTTAGTTTTACCATGTTCCTCACTAGAGAAGGCCATGTATATACCTGTGGAACAAACACTCATGGGCAGCTTGGTCATGGAGACACCCTGGATCGACCAACGCCAACACTTGTGGAGCTGCTTCAGGGTGTTGGCCCTGTAGTTCAAATTGCTGCTGGTCCAAGCTATGCTTTAGCTGTGACTTCTGATGGGACTGTTTACTCATTTGGGTCAGGTACCAACTTTTGTCTAGGTCACAGTGAGCAGCATAATGAGCATCAACCTCGGGCCATCCTGTCTTTTAGAAGAAAGGGTATCAATGTGGTTCGTGTCTCTGCTGGTGATGAGCATGTTGTGGCTCTTGACTCTTGTGGATATGTATACACTTGGGGCAAAGGCTACTGTGGCGCATTGGGCCATGGAGATGAAATTGATAAGACTACTCCATCACTTTTGAGCAGCCTGAAGAGCCAAATTGCTGTGCAGGTTTGTGCTAGTAAAAGGAAAACTTTTGTGCTAGTTGACACTGGCTCTGTTTACGCTTGTGGTTGGATGGGTTTCGGCAGCCTTGGGTTTACAGACAGGGGAGTATCTGATAAAGTCACTAAGCCCCGAGTTCTTGACAGCTTGAGAGCTCATTATATTTCTCAGATTAGCACTGGCCTTTATCACACTGTTGTGATTACAAGCAGAGGTCAGATTTTCGGCTTTGGGGACAATGAAAGAGCTCAACTTGGACATGACTCCTTGAGAGGTTGCCTCAAACCAACTGAAATATTCGTCGATGAGATGGCAGACAATGACGCTGCTGTCACAGAAAGTACATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54047.p1 GENE.S_Transcript_54047~~S_Transcript_54047.p1 ORF type:complete len:492 (+),score=96.47,RCC1|PF00415.14|4.8e+02,RCC1|PF00415.14|0.00031,RCC1|PF00415.14|4.3e-07,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.2e-10,RCC1|PF00415.14|1.6e-08,RCC1|PF00415.14|1.3e-05,RCC1|PF00415.14|0.0028,RCC1_2|PF13540.2|0.061,RCC1_2|PF13540.2|2.6e-05,RCC1_2|PF13540.2|1.3e-07,RCC1_2|PF13540.2|1.1e-06,RCC1_2|PF13540.2|4.2e-05,RCC1_2|PF13540.2|1.1,RCC1_2|PF13540.2|2e-06 S_Transcript_54047:576-2051(+)
MGFKIDELPSHLVLEILTSGRLSAVDLVCVELSSSSIFGGLNNQGLLFPLKFKSLVDLAAYQLCGSHPIYGSLSLEAQKALFDRCHGNWKRVLRFLQSVEQASDIVETSSGNMQIKAGRYHTLLVSNSSVYSCGSSFCGVLGHGSETTQCVSFSRIIFPSFSPVVQVSASHNHAAFVTQSGEVFTCGDNSSFCCGHKDTGRPIFRPRLVEALNGIPCKQVAAGLSFTMFLTREGHVYTCGTNTHGQLGHGDTLDRPTPTLVELLQGVGPVVQIAAGPSYALAVTSDGTVYSFGSGTNFCLGHSEQHNEHQPRAILSFRRKGINVVRVSAGDEHVVALDSCGYVYTWGKGYCGALGHGDEIDKTTPSLLSSLKSQIAVQVCASKRKTFVLVDTGSVYACGWMGFGSLGFTDRGVSDKVTKPRVLDSLRAHYISQISTGLYHTVVITSRGQIFGFGDNERAQLGHDSLRGCLKPTEIFVDEMADNDAAVTEST*

Click here to download the sequence:
Link to NCBI Protein BLAST