Transcript Information: S_Transcript_54241.p1


Annotated TAIR IDAT5G35840.1
Annotated Gene Namephytochrome C
Annotated Gene Symbol(s)PHYC
Annotation TypeOrtholog
Chromosome Positionchr5:14008049-14011619 | Forward length=1111
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.683989996813
Replicate 215.158388215491
Replicate 316.006594526458
Condition 2: 8 Hour
Replicate 122.610963492279
Replicate 219.396868767423
Replicate 321.353641661019
Condition 3: 24 Hour
Replicate 115.76394961112
Replicate 215.069023654486
Replicate 315.428378226534


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54241.p1 GENE.S_Transcript_54241~~S_Transcript_54241.p1 ORF type:complete len:1128 (+),score=228.30,PHY|PF00360.16|2.5e-60,PAS_2|PF08446.7|4.3e-39,PAS_2|PF08446.7|2.8e+03,PAS|PF00989.20|3.5e-16,PAS|PF00989.20|3.2e-18,GAF|PF01590.22|3e-31,GAF|PF01590.22|1.5e+04,GAF|PF01590.22|6.2e+02,PAS_4|PF08448.6|2.5e-05,PAS_4|PF08448.6|0.037,PAS_9|PF13426.2|0.13,PAS_9|PF13426.2|0.015 S_Transcript_54241:687-4070(+)
ATGTCTTCGAGGTCTATAAGCAGGACCAATTCAAGGAGCAGTTCTGTAAGGTCAAGGCATGATGCTCATGTCATGGCGCAAACCCCGATTGATGCTCAGCTTGCTTCAAGATTTAATGAGTCGAAGCGCCTTTTTGATTATTCTTCCTCTGTTGACCTCAACTTGTCAACTTCCACTAGCAATATCCCTTCTTCAACAGTATCGTCTTATCTCCGAAACATCCAAAGGGGAAGTTTAATCCAGTCGTTTGGTTGTTTGATTGCTATCGATGAGGAGAACTTCGCTGTCCTTGCTTTTAGTGAAAATACGCCTGAAATGTTGGACTTGGCTTCACATGCTGTTCCAAACATTGAGCAGCAAGAAGCTCTAACCTTTGGAACTGATGTCAGAACTCTATTTACTTCATCGGGTGCTTCTGCACTGCAAAAGGCTGTAAAATTTCCGGAAATTAACCTCCTCAACCCCATACTTTTACATTGTAAAAACTCAGGTAAACCCTTCTATGCTATTCTTCACAGAATTGATGTGGGGATGGTTATAGATTTGGAGCCAGTGAATCCAGCTGATGCGCCAGTTCCTGCTTCCGGTTCCTTCAAATCTTATAAGCTTGCAGCCAAGGCAATATCAAGATTGCAATCTTTACCGAATCGAAACATCTTGCTTTTGTGTGATGTTTTAGTTAAAGAAGTGAGTGAATTGACGGGCTATGATCGTGTTATGGTGTATAAATTCCATGAAGATGAGCATGGTGAAGTGATTGCTGAGTCCCGTAGGTCCGATTTGGATCCTTATCTTGGCCTACATTATCCAGCGACTGATATACCACAAGCTTCAAGATTTCTTTTCTTGAAGAACAAGGTGAGAATGATATGTGATTGTCTAGCTCCACCTGTTAAGGTGATTCAAGATAAGAAACTGGCTCAATCATTGAGTCTTGGGGGATCAACTTTGAGGGCGCCCCATGGGTGCCATGCACAGTATATGGCTAACATGGGTTCAATTGCATCACTTGCGATGGCTGTGACGATCAATGATGATGATGATGAGGTTAAAAGTGATCAGCAAACAGGAAAAAAATTGTGGGGCTTGGTTGTTTGTCATCACACAAGTTCCAGGTTTGTTCCATTCCCGCTGAGGTATGCATGCGAGTTGTTAGTTCAAATCTTCAGTATGCAGATCAATAAGGAGGTTGAATTGGCTGCTCAAATGAAGGAAAAGCATATTTTAAGGATTCAAACTGTGCTCTGCGACATGCTTCTCAGAGAGTCCCCGATAGCCATTATCACCCAGTCACCAAACGTGATGGATTTGGTCAATTGTGATGGAGCTTCACTTTACTACAAGGGCAACGTTAGGCTGCTTGGTGTCACTCCTACTCAGAATCAAATAAAAGATATTGCAGAATGGCTCCTTCAAAATCATGGTCATACCAATGGATTCAGTACTGACAGCCTTATGGAAGCTGGTTACCCTGGTGCTGCAGAACTTGGTGAGACAGTTTGTGGTATGGCTGCTGTTAGAATCAGTTCGACAGATATCCTATTCTGGTTTAGGTCCCACACAGCTAAGGAAGTAAAATGGGGTGGTGCAAAACATGATCCTGTTGACAATGATGATAGGAGAAAAATGCACCCAAGATCATCATTCAAGGCTTTCCTAGAGGTAGTCAAGTGGAGAAGCCTTCCTTGGGAAGATATGGAAATGGACGCCATCCACTCATTGCAGCTAATATTACGAGGTTCTTTGCAAGAAACTGCTGTGGACAACTCAAAAGTCATAGCGGAGGATTCAAAAATGATTGTGAATGTGCCTCGAGCCGAGGACCTCCAGCATTCGGTTACTGAACTACGAACTGTCACCAAAGAGATGGTTCGTCTCATTGAGACTGCTGTTGTCCCGATATTCTCTGTTGATGTTTCTGGAACTATTAATGGATGGAATGTCAAAGTGGCTGAATTAACTGGATTGGCTATAGAGCAAGCAATTGGGTTACCGTTATTCACCGTGGTTGTTGATGAAGCCGTTGATGCAGTGAAAAACATGATCTCCCTGGCTATTCAAGGTATAGAAGAAAAAGATGTAGAAGTAAGGTTAAGAACATATGGTCCTCATGAAGGGAATGATCCTGTTGTTATTGTACTTAGTACATGTTGTAATCGAGATGTGGATGGAAATGTTACAGGTCTTTGCTTTATTGGCCAAGATATTACTTCACAGAAAATGACTATGGACAAATATACTCAAGTACAGGGTGATTATACTGGAATTGTGAGGAATCCTTGTCACCTTATTCCTCCAATATTTATTACAGATGAACAGGGCCTATGTGTGGAGTGGAATGATGCAATGGAAAAATTGTCTGGTATGAGGAAAGAAGCAGTTATTGGTCGGATGCTTCTCGGGGACGTTTTTACTTTAGAAAATCTTGGTTGCCAGGTTAAAGATCATGACACTTTAACCAGACTCAGGATATTGGTAAATAAGATTCTTGCAGGTGAGGATGCCGATAAGGTGCTTTTTGGGTTCTTTGATCAGTATGGTAACTGTACAGATGCACTGCTTTCTGGCAGTCCTCGCACTAATGCTGAGGGAAGGATTACTGGGGTTTTGTGTTTTCTGCATGTACCTAGTCCAGAGCTTCAATATGCCATGCAGATGAAGAGCCTCTCAGAAAAGGCTGCTGACAGTAGCCTAAAGAAACTGACTTATCTCCGTCAACAGATCAGAAATCCAATAGCAGGAATTTTGTGTACTCGCAGGTTGATGGAGTCATCTGATGTAAACAGAGAGCAAAAGCGGCTCCTGACGACTAGAACATTATGCGAGGATCAATTAATGAAGGTTGTCGAGGACACTGATATCCCAAGGATTGAGGAAGGCTTTATGGAATTGAACCCTACAGAATTCAATCTCGGAGAAGCTCTTGATGCAGTCATGAGCCAGGCGATGTCTTCAAGCCAGGATAGGCAGGTCCAGATCATGCGAGATTCACCTGCTGAAGTGTCCTCTATGTATCTGTATGGAGACTATTTGAGGCTCCAGCAAGTCCTTGCTGATTTCCTGTCAACAGCTGCCCGTTTCACTCCGGTTATCGAAGAACTCAAGCTCGTGGTAAATCCTAAAAGAGAACATCTCGGGACAAAGATGCAAATCCTAAATGTTGAATTCAGGGTTATGCACCCATCACCGGGGGTCCTGGAAGCTCTAATTCAAGAGATGTTTCACCACAAACCAGGAATGTCTAGAGAAGGCTTGGGCTTGTACATTAGCCACAAGCTTGTGAAAATCATGAATGGCACTGTGCGGTACCTTAGAGGAGAACAATCTTCTGCATTCATCATTCTCCTAGAGTTCCCATTTGCTCAAGATATTGGTGTCAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54241.p1 GENE.S_Transcript_54241~~S_Transcript_54241.p1 ORF type:complete len:1128 (+),score=228.30,PHY|PF00360.16|2.5e-60,PAS_2|PF08446.7|4.3e-39,PAS_2|PF08446.7|2.8e+03,PAS|PF00989.20|3.5e-16,PAS|PF00989.20|3.2e-18,GAF|PF01590.22|3e-31,GAF|PF01590.22|1.5e+04,GAF|PF01590.22|6.2e+02,PAS_4|PF08448.6|2.5e-05,PAS_4|PF08448.6|0.037,PAS_9|PF13426.2|0.13,PAS_9|PF13426.2|0.015 S_Transcript_54241:687-4070(+)
MSSRSISRTNSRSSSVRSRHDAHVMAQTPIDAQLASRFNESKRLFDYSSSVDLNLSTSTSNIPSSTVSSYLRNIQRGSLIQSFGCLIAIDEENFAVLAFSENTPEMLDLASHAVPNIEQQEALTFGTDVRTLFTSSGASALQKAVKFPEINLLNPILLHCKNSGKPFYAILHRIDVGMVIDLEPVNPADAPVPASGSFKSYKLAAKAISRLQSLPNRNILLLCDVLVKEVSELTGYDRVMVYKFHEDEHGEVIAESRRSDLDPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVIQDKKLAQSLSLGGSTLRAPHGCHAQYMANMGSIASLAMAVTINDDDDEVKSDQQTGKKLWGLVVCHHTSSRFVPFPLRYACELLVQIFSMQINKEVELAAQMKEKHILRIQTVLCDMLLRESPIAIITQSPNVMDLVNCDGASLYYKGNVRLLGVTPTQNQIKDIAEWLLQNHGHTNGFSTDSLMEAGYPGAAELGETVCGMAAVRISSTDILFWFRSHTAKEVKWGGAKHDPVDNDDRRKMHPRSSFKAFLEVVKWRSLPWEDMEMDAIHSLQLILRGSLQETAVDNSKVIAEDSKMIVNVPRAEDLQHSVTELRTVTKEMVRLIETAVVPIFSVDVSGTINGWNVKVAELTGLAIEQAIGLPLFTVVVDEAVDAVKNMISLAIQGIEEKDVEVRLRTYGPHEGNDPVVIVLSTCCNRDVDGNVTGLCFIGQDITSQKMTMDKYTQVQGDYTGIVRNPCHLIPPIFITDEQGLCVEWNDAMEKLSGMRKEAVIGRMLLGDVFTLENLGCQVKDHDTLTRLRILVNKILAGEDADKVLFGFFDQYGNCTDALLSGSPRTNAEGRITGVLCFLHVPSPELQYAMQMKSLSEKAADSSLKKLTYLRQQIRNPIAGILCTRRLMESSDVNREQKRLLTTRTLCEDQLMKVVEDTDIPRIEEGFMELNPTEFNLGEALDAVMSQAMSSSQDRQVQIMRDSPAEVSSMYLYGDYLRLQQVLADFLSTAARFTPVIEELKLVVNPKREHLGTKMQILNVEFRVMHPSPGVLEALIQEMFHHKPGMSREGLGLYISHKLVKIMNGTVRYLRGEQSSAFIILLEFPFAQDIGVR*

Click here to download the sequence:
Link to NCBI Protein BLAST