Transcript Information: S_Transcript_54495.p1


Annotated TAIR IDAT5G25060.1
Annotated Gene NameRNA recognition motif (RRM)-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:8634219-8639984 | Reverse length=946
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.482159711747
Replicate 220.859755268108
Replicate 322.375510379909
Condition 2: 8 Hour
Replicate 127.783225164872
Replicate 225.421565104733
Replicate 325.612225846686
Condition 3: 24 Hour
Replicate 122.972224118639
Replicate 219.221207286269
Replicate 318.984070423714


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54495.p1 GENE.S_Transcript_54495~~S_Transcript_54495.p1 ORF type:5prime_partial len:1027 (+),score=251.34,Surp|PF01805.16|1.6e-15,RRM_1|PF00076.18|1.1e-13,cwf21|PF08312.8|1.6e+04,cwf21|PF08312.8|7.5e-09,RRM_6|PF14259.2|2.8e-06,CTD_bind|PF04818.9|3.1e-05,CTD_bind|PF04818.9|1.6e+04 S_Transcript_54495:3-3083(+)
CTTTCCTCCTCCAACATTATGAATTCACGACAATCCCCCACCCCACCTTCCTCCAAATCAAAATCAAAACCAAAACAAAAAAAAGCCCCATCCCCCTCACTTCCATCCGTCACAACCACTACCGGCGACAGCACAGTCATCGCGCCGCTCAGCCCGCAACCACCATCACGAGAGATGAGTTCTTTTTCGATTACGCGAAAGAAGACTCCATTCCAAAAGCACAGAGAAGAAAAGGAAGCAAAAAAGAAGAGGGCAGAAGATGAAACAGCTCGTTTGTATGAGGAATTTCTTGAATCATTCCAAGGGGAGGACCTTCCAGGTTCGAAGGCTTTTGTACGAGGAGGCACAATTAATCCCAATGAGAAAGCGAAAGTTGACTCTGGAGGTGGAAATTCCAAGGATGGTGTATCTGGTTCAAAGAAGGGGAGTAGCAGCAGATATGTTCCATCATTCTTACCACCTCCGATGGCAGCTAAAGGCAGAGAACCTGAGCGGGAGGAACCTAAAGATAAACCGAAAGAGAAAGAGAAAGGTAGATCGAGAAATATTGACAATTTTATGGAGGAGTTAAAGCAAGAGCACGAAATAAGAGAGAAGGAAAAAAAAGATAAATGGCGAGATGGGCGTCTTGATGAACATACTGCTCCATTTACACGATTCGATGAGCTTCCTGATGAATTTGATGCCAGTGGGAGAGGGTCATTTGATGATGGTGATCCACAAACTACGAATCTCTATGTTGGAAATCTTTCTCCAAAGGTGGATGAGAATTTTCTGTTGCGAACCTTTGGGAGGTTTGGACCCATTGCTAGTGTGAAAATCATGTGGCCTAGGACAGAAGAAGAACGAAGGCGGCAAAGAAATTGTGGCTTTGTTGCTTTTATGAATAGAGCTGATGCACAGGCTGCAAAGGATGAAATGCAAGGTGTTGTTGTGTATGAATATGAGTTGAAGATTGGATGGGGTAAATCTGTTGCTCTTCCATCTCAAGCGCTACCTGCCCCTCCGCCTGGTCACATGGCTATCCGAAGTAAAGAGGGTGGTACTGTAATCTTGTCTGGCTCAGGTACCCCTGTGACACCTGTCCCAAATCAGAATTCTGAATTGGTCCTCACTCCTAATGTACCGGATATAATGGTCGTACCTCCTGAGGATAAACATCTTCGCCATGTCATTGATACCATGGCTTTATATGTTTTGGATGGAGGCTGTGCCTTTGAGCAAGCGATAATGGAGCGTGGCCGTGGGAATCCGCTTTTTAGTTTCTTGTTTGAACTCGGTTCAAAGGAACACATGTACTACGTTTGGAGGCTTTATTCCTTTGCTCAGGGTGACACACTACAGAGGTGGAGAACAGAACCCTTCATTATGATTACTGGTAGTGGGAGGTGGGTGCCTCCATCACTTCCTACAGCTAGAAGTCCAGACCTTGAAAAGGAGTCTAGCTCAACATATGCCGCAGGAAGGAGCAGGCGAGTAGAGCCTGAAAGGACACTTACAGACTCGCAGAGGGATGAGTTTGAGGATATGCTGCGTGCTTTGACATTGGAAAGGAATCAGATTAAAAATGCTATGGGATTTGCTTTGGATAATGCTGATGCAGCAGGCGAGATAGTTGAGGTTTTAACGGAGTCTTTGACTCTGAAGGAAACCCCTATTCCAACAAAAGTTGCAAGGCTGATGCTTGTGTCTGACATTCTTCATAACAGCAGTGCTCCTGTGAAGAATGCATCTGCATACCGTACTAAATTTGAGGCAACATTGCCTGACATAATGGAGAGCTTCAATGACTTGTACCGTGGCATAACTGGTAGAATTACTGCTGAAGCTCTCAAAGAGCGAGTATTAAAAGTTCTTCAAGTTTGGTCAGACTGGTTTCTGTTTTCAGATGCATATGTGAATGGATTACGAGCTACTTTTCTTCGACCCAGCGCTTCTGGGGTAATACCTTTCCATTCAATATGTTTTGATGCACCAGAACTAGAAGAAAAGGCTGGTTCTGAAGATACCAGTGATGGGAGCAAAGCTTACCAAGACGGAGCGTTGGCTATGGGCAAGGGAGCTGCCATGAAAGAGCTCTTAAGCTTGCCCCTTCCTGAGCTGGAAAGGCGTTGTAGACACAACGGACTCTCACTTGTTGGGGGTAGAGAGATGATGGTGGCCCGGTTGCTATACCTGGGAGAAGCAGAAAAGCAAAGGGGAATTGAACTGGAAGAGGACCTGAAATATGCGCAGGTGCATTCAAGCTCAGGTAGGTTTGGAAGTGTGCCGAATGAAACAAATGCTGAGATGGTGGATGCAGGATCATCGACATGGAAACATTACCAGGATGATGAAATTAGATCACAAGCACAAGGATTGGCCTCTTTGCCTCAAGCACTTGGTATACCGCAGCCTAAACTCAAAGCATTTACGAAGAAAGAGAAAGCTGAACCTGTCTTGCCAGCCTCAAAGTGGGCTCGGGAAGATGATGAGGACGATGATGAGCCAAAGCAAGGATCTAGAGGTCTGGGATTGGGATACTCATCTTCTGGGAGTGAGAATGCTGCAGATGATAGTGACAATGCCGAGGAGATTGAAAATGCAGCGTACACTAGTTCTGCTACTCAACCTGAAGTCTCAATAAATGAAGAGCAACGACAAAAATTGAGACGCTTGGAAGTTGCATTGATGGAATACCGGGAATCTCTTGAAGAGCAAGGAACCAAGAGTCCAGAGGAAATTGAGAGGAAGGTTGCAGTGTACAGGAAACATCTTGAATCGGAATATGGCTTATCAGATTCAAGTTCTAATGTTCACTGGAGTAAAAGGATAGAACAAAAAGATGACTCGCGAGAGTCTTCTAGAAAGCGGCATCGCAGCAGAAGTCAAAGTGGGAGCCCAGCACGCAGGAAAAGGGAAAAGGAAGATGCAGACAGGGATCGGCGTGGTAGGGTCAGGGACAGATCCGAAGATTCAGATAGTGAAAAGGCTAGGGACAGAGATAGAGACCGCGAGAAGAGTGGTAGTCTTGACCGGGATTATCATGAAAGGGATAGGGGACGAGAGAGAGACAAGGATAGAAGACGGAGGATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54495.p1 GENE.S_Transcript_54495~~S_Transcript_54495.p1 ORF type:5prime_partial len:1027 (+),score=251.34,Surp|PF01805.16|1.6e-15,RRM_1|PF00076.18|1.1e-13,cwf21|PF08312.8|1.6e+04,cwf21|PF08312.8|7.5e-09,RRM_6|PF14259.2|2.8e-06,CTD_bind|PF04818.9|3.1e-05,CTD_bind|PF04818.9|1.6e+04 S_Transcript_54495:3-3083(+)
LSSSNIMNSRQSPTPPSSKSKSKPKQKKAPSPSLPSVTTTTGDSTVIAPLSPQPPSREMSSFSITRKKTPFQKHREEKEAKKKRAEDETARLYEEFLESFQGEDLPGSKAFVRGGTINPNEKAKVDSGGGNSKDGVSGSKKGSSSRYVPSFLPPPMAAKGREPEREEPKDKPKEKEKGRSRNIDNFMEELKQEHEIREKEKKDKWRDGRLDEHTAPFTRFDELPDEFDASGRGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADAQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGHMAIRSKEGGTVILSGSGTPVTPVPNQNSELVLTPNVPDIMVVPPEDKHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFSFLFELGSKEHMYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWVPPSLPTARSPDLEKESSSTYAAGRSRRVEPERTLTDSQRDEFEDMLRALTLERNQIKNAMGFALDNADAAGEIVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRGITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRPSASGVIPFHSICFDAPELEEKAGSEDTSDGSKAYQDGALAMGKGAAMKELLSLPLPELERRCRHNGLSLVGGREMMVARLLYLGEAEKQRGIELEEDLKYAQVHSSSGRFGSVPNETNAEMVDAGSSTWKHYQDDEIRSQAQGLASLPQALGIPQPKLKAFTKKEKAEPVLPASKWAREDDEDDDEPKQGSRGLGLGYSSSGSENAADDSDNAEEIENAAYTSSATQPEVSINEEQRQKLRRLEVALMEYRESLEEQGTKSPEEIERKVAVYRKHLESEYGLSDSSSNVHWSKRIEQKDDSRESSRKRHRSRSQSGSPARRKREKEDADRDRRGRVRDRSEDSDSEKARDRDRDREKSGSLDRDYHERDRGRERDKDRRRRMR*

Click here to download the sequence:
Link to NCBI Protein BLAST