Transcript Information: S_Transcript_54532.p1


Annotated TAIR IDAT1G19520.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)NFD5
Annotation TypeOrtholog
Chromosome Positionchr1:6760032-6762581 | Forward length=725
E-Value6.2E-228
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.960325178964
Replicate 216.082286208357
Replicate 317.069891965018
Condition 2: 8 Hour
Replicate 120.965973626395
Replicate 219.543946424031
Replicate 320.477583935122
Condition 3: 24 Hour
Replicate 115.524594166068
Replicate 214.483194195559
Replicate 314.453081625404


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54532.p1 GENE.S_Transcript_54532~~S_Transcript_54532.p1 ORF type:complete len:712 (+),score=176.29,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|6.6e-05,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.00019,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|1.4e+02,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|0.043,PPR|PF01535.16|0.0021,PPR|PF01535.16|0.024,PPR|PF01535.16|42,PPR|PF01535.16|0.0036,PPR|PF01535.16|1.3,PPR|PF01535.16|0.45,PPR|PF01535.16|24,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|39,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.042,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|96,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|0.00022,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|2.2e+02,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.4,TPR_19|PF14559.2|0.11,TPR_19|PF14559.2|4.6e+02,TPR_19|PF14559.2|6.7,TPR_19|PF14559.2|1.1e+02,TPR_14|PF13428.2|5.9e+02,TPR_14|PF13428.2|56,TPR_14|PF13428.2|45,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|5e+03,TPR_14|PF13428.2|5.1e+02,TPR_14|PF13428.2|2.1e+02 S_Transcript_54532:276-2411(+)
ATGAATCTCAGGCTCAAGCACTTACTGTCTAGACAAACAATATCAACTCTCACTCGCCTTAACGCCATCATTACGTCATCATCATCTTGTTCTTCAATTAGTTCCTCAACTTCCATTTTCATTAATGCTCAAAATTCCGCAACAATACCATCATTTGCTAAACCCTTCCATTCCTCTCCAAACCACCTCAAATTCCCCCAATCCCAAACCCTAGCAGTTACTCAAGATTCCGATGAAGACGATGATGCTGAAATGAACGAGTTCCTGTCCCGATTTGTCCACCAAATGAGGTCGAACCTTGATGAATCGTACCCTCAGTGCGACAAACAAACGGTTGATGCTATGCTTGTGGTGATTGTTGAGAAGCTTGTGGCTCAATTAGAGAAGGGTGAGGCCTTGGAGGATATGGATGGCATGGAATTTAGTGACGATTTGTGGAAAACGGTGTTGGAGGTTAGCAATGTGGTGTACCAGGAAATGGAGAGAGAGAAAATGAAGGAGAAGATGCAGAAGTATTTGCAGTCTGATAGTGTCAAGGCTATGACTAGGTTTGCGAGCGAGGTGGGAGTTCGTGGGGATATGTTGAGGGAGCTCAGGTTTAAGTGGGCTCGTGAGGCCTTGGAGGAGATCGAGTTTTACGAGCAGTTGGACCGACTTCGGAAGGAGGGGGAAGAAGAAGAAGAAGTAGAAGTAGAACAAGGAGAGAGTGAGGGAACTGAGAATGGCCGCGAAAGGGAAGGAGAGAGAGTGAAAGGGGGTTTTGATGGTGGTTTGCCAAAGCGGCATGGGAAGATCAAGTATAAGTTGTATGGGCTTGATATGTCCGGGCCTCAATGGAAAGAAGTGGCTGATAAGATTCATGAGGCTGGGGAGGTTATTTGGCCAGAAGAGGCGAAGCCGATTACTGGGAAATGTAAGCTGGTTACTGAGAAGATTCTTGGTTTGGGGAAGGATGATGATTTTTCACCCTTGCTTGATGAATGGGAGGAGCTATTGCAGCCTACCAGAGTTGATTGGAATAGCTTGCTTGATAACTTGAAGGGAAAGGACAGGAGTTTATACTTGAAGGTGGCAGAGCATGTCCTGAGCAAGCCTTCCTTCCAAACTGACATCCGAGACTACTACTCAAAGCTTATTGATATTCATGCTCAAGCAAATCGGCTAGAGGATGTTGAAAGAATTCTTAAGAAGATGAGCGATAATGGCATGTCACCAGATATTATAATATTGACAGCTTTGATCCACATGTATAGCAAGGCCGGAAATCTTGAAGAAGCAAAAGAAGCTTTTGAAACACTGAGGATTCAAGGTTTTAAACCAGCTTTACAGGTTTACAACTCAATGATAATTGCATATGTCAATGCTGGTAAGCCAAAGCCGGGTGAGGCACTGTTGAGAGAGCTAGAGACTAGGGATGCTAAACCTACAGAAGATATCTATATGGCATTGCTGCGGGGGTTCGCTCAACGTGGTAATGTCACTGGAGCACAAAGAATAGATACCTGTATGAAGTTTGCAGGCTTTGAGCCAACTTTGGAGTCTTACTCTCTGCTTATTGAGGCATTTGGGAAATCTGATAATACTAGTGATGCAAGAAACACTTTTGATTCCATGACTAAAATGGGGTTCAAGCCCAATGACAGATGCACTGCGTTAATGATTTCTGCATATGACAAGAAGAATGAACTAGACAAGGCGTTGAAGCTTCTGTTGCAGCTGGAAAAAGATGGGTTTGAACCTGGACTTTTAACCTACTGTGCTTTAGTGGATTGGCTGAGTAAGTTGCAGTTGGTTGATGAGGCTGAGCAAATTTTGGAGAAAATTGCTCAGCTGGGTGAAGTTCCTCCATTCAAGATCCAAGTAAGCCTTTGCGACATGTATGCACAGGTGCACATGGAGAAGAAAGCACTTCAGGCCTTGGGAGTGCTGGAGGCCAAAAAGGAACTCTTGGATTCCCAGGATTTCGAGAGGATTATAACCGGACTTGTAAATGGTGGTTTTGTGCAGGATGCCAAGAGAATACGCGGGTTAATGGAAGCCCGAGGGTTTATTGTACCAGATGGTATCCAAATAAAAATGATGTCAACCCAAGCCTTTGGTGGACGTAGTGGTAGCAATAGACCAGAAAACCGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54532.p1 GENE.S_Transcript_54532~~S_Transcript_54532.p1 ORF type:complete len:712 (+),score=176.29,PPR_2|PF13041.2|0.013,PPR_2|PF13041.2|6.6e-05,PPR_2|PF13041.2|0.0024,PPR_2|PF13041.2|0.00041,PPR_2|PF13041.2|0.00019,PPR_2|PF13041.2|0.00039,PPR_2|PF13041.2|3.5,PPR_2|PF13041.2|1.4e+02,PPR|PF01535.16|1.5e+04,PPR|PF01535.16|0.043,PPR|PF01535.16|0.0021,PPR|PF01535.16|0.024,PPR|PF01535.16|42,PPR|PF01535.16|0.0036,PPR|PF01535.16|1.3,PPR|PF01535.16|0.45,PPR|PF01535.16|24,PPR_3|PF13812.2|0.6,PPR_3|PF13812.2|0.18,PPR_3|PF13812.2|39,PPR_3|PF13812.2|19,PPR_3|PF13812.2|0.042,PPR_3|PF13812.2|3.7e+02,PPR_3|PF13812.2|32,PPR_3|PF13812.2|96,PPR_1|PF12854.3|1.8e+03,PPR_1|PF12854.3|18,PPR_1|PF12854.3|0.00022,PPR_1|PF12854.3|1.8e+02,PPR_1|PF12854.3|2.2e+02,PPR_1|PF12854.3|0.14,PPR_1|PF12854.3|19,PPR_1|PF12854.3|0.4,TPR_19|PF14559.2|0.11,TPR_19|PF14559.2|4.6e+02,TPR_19|PF14559.2|6.7,TPR_19|PF14559.2|1.1e+02,TPR_14|PF13428.2|5.9e+02,TPR_14|PF13428.2|56,TPR_14|PF13428.2|45,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|5e+03,TPR_14|PF13428.2|5.1e+02,TPR_14|PF13428.2|2.1e+02 S_Transcript_54532:276-2411(+)
MNLRLKHLLSRQTISTLTRLNAIITSSSSCSSISSSTSIFINAQNSATIPSFAKPFHSSPNHLKFPQSQTLAVTQDSDEDDDAEMNEFLSRFVHQMRSNLDESYPQCDKQTVDAMLVVIVEKLVAQLEKGEALEDMDGMEFSDDLWKTVLEVSNVVYQEMEREKMKEKMQKYLQSDSVKAMTRFASEVGVRGDMLRELRFKWAREALEEIEFYEQLDRLRKEGEEEEEVEVEQGESEGTENGREREGERVKGGFDGGLPKRHGKIKYKLYGLDMSGPQWKEVADKIHEAGEVIWPEEAKPITGKCKLVTEKILGLGKDDDFSPLLDEWEELLQPTRVDWNSLLDNLKGKDRSLYLKVAEHVLSKPSFQTDIRDYYSKLIDIHAQANRLEDVERILKKMSDNGMSPDIIILTALIHMYSKAGNLEEAKEAFETLRIQGFKPALQVYNSMIIAYVNAGKPKPGEALLRELETRDAKPTEDIYMALLRGFAQRGNVTGAQRIDTCMKFAGFEPTLESYSLLIEAFGKSDNTSDARNTFDSMTKMGFKPNDRCTALMISAYDKKNELDKALKLLLQLEKDGFEPGLLTYCALVDWLSKLQLVDEAEQILEKIAQLGEVPPFKIQVSLCDMYAQVHMEKKALQALGVLEAKKELLDSQDFERIITGLVNGGFVQDAKRIRGLMEARGFIVPDGIQIKMMSTQAFGGRSGSNRPENR*

Click here to download the sequence:
Link to NCBI Protein BLAST