Transcript Information: S_Transcript_54643.p2


Annotated TAIR IDAT5G15880.1
Annotated Gene Nameunknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5185788-5187461 | Forward length=348
E-Value5.3E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3747399290708
Replicate 24.2312199151398
Replicate 33.0316826438796
Condition 2: 8 Hour
Replicate 14.9661867861817
Replicate 23.2178686399607
Replicate 33.9419718173596
Condition 3: 24 Hour
Replicate 12.6932048139089
Replicate 23.7255580673448
Replicate 33.6278283048455


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54643.p2 GENE.S_Transcript_54643~~S_Transcript_54643.p2 ORF type:5prime_partial len:146 (+),score=16.08 S_Transcript_54643:3-440(+)
CAACCGTCACTCGCACCCTCACCACATTCTGATCACAACAACAACCAGTGTAAGTGTAACCGAAACCCAGCGCGAGAGAAAGAGAGAGAGATGGCGGGGCTGCTAGCATGGGCAGCAGATGTAGTAGGAGGAGGTGGTGGAAGCGATCAAGGATCCGACGGCCCTGATTCCATCCCTCTCATTCTAACCCCAGAACAACAACTCTACCTCTCTGAATTAAACCACAAAGCGGCTTCTCTGAACCGTTCGATCCAGGATCTACGGCTTAGAATCCCTCCTTCTGACATCTCTCTACGTCTCCCTCACCTTCATGCTCATTCACTCGCTTCCAATGCTGCCCTTGCCCTTCAATTAAATTCCCACTCTGCCACCCGCGAACAGGTACGTTCAGGCACAACAAAGGGAGGCGAAGTTGCTGGAAGAAAATGTCGCCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54643.p2 GENE.S_Transcript_54643~~S_Transcript_54643.p2 ORF type:5prime_partial len:146 (+),score=16.08 S_Transcript_54643:3-440(+)
QPSLAPSPHSDHNNNQCKCNRNPAREKEREMAGLLAWAADVVGGGGGSDQGSDGPDSIPLILTPEQQLYLSELNHKAASLNRSIQDLRLRIPPSDISLRLPHLHAHSLASNAALALQLNSHSATREQVRSGTTKGGEVAGRKCRL*

Click here to download the sequence:
Link to NCBI Protein BLAST