Transcript Information: S_Transcript_54648.p2


Annotated TAIR IDAT5G15880.1
Annotated Gene Nameunknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:5185788-5187461 | Forward length=348
E-Value2.1E-40
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.79679644416708
Replicate 21.189012610884
Replicate 30.22087109082156
Condition 2: 8 Hour
Replicate 10.63848474003392
Replicate 21.0717053240588
Replicate 31.7869572842499
Condition 3: 24 Hour
Replicate 10.78484611343452
Replicate 20.27142289312991
Replicate 30.45309061805598


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54648.p2 GENE.S_Transcript_54648~~S_Transcript_54648.p2 ORF type:5prime_partial len:167 (+),score=17.30 S_Transcript_54648:3-503(+)
CAACCGTCACTCGCACCCTCACCACATTCTGATCACAACAACAACCAGTGTAAGTGTAACCGAAACCCAGCGCGAGAGAAAGAGAGAGAGATGGCGGGGCTGCTAGCATGGGCAGCAGATGTAGTAGGAGGAGGTGGTGGAAGCGATCAAGGATCCGACGGCCCTGATTCCATCCCTCTCATTCTAACCCCAGAACAACAACTCTACCTCTCTGAATTAAACCACAAAGCGGCTTCTCTGAACCGTTCGATCCAGGATCTACGGCTTAGAATCCCTCCTTCTGACATCTCTCTACGTCTCCCTCACCTTCATGCTCATTCACTCGCTTCCAATGCTGCCCTTGCCCTTCAATTAAATTCCCACTCTGCTACCCGCGAACAGGTACGTTCAGGGAGGCGAAGTTGCTGGAAGAAAATGTCGCCTTTAAAAATGAAATATCAAATTGTCTGGCAAAGATCCAAGAGAGGTCACAGGAGGCAGAACAATTGCAGAGGAGGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54648.p2 GENE.S_Transcript_54648~~S_Transcript_54648.p2 ORF type:5prime_partial len:167 (+),score=17.30 S_Transcript_54648:3-503(+)
QPSLAPSPHSDHNNNQCKCNRNPAREKEREMAGLLAWAADVVGGGGGSDQGSDGPDSIPLILTPEQQLYLSELNHKAASLNRSIQDLRLRIPPSDISLRLPHLHAHSLASNAALALQLNSHSATREQVRSGRRSCWKKMSPLKMKYQIVWQRSKRGHRRQNNCRGG*

Click here to download the sequence:
Link to NCBI Protein BLAST