Transcript Information: S_Transcript_54659.p1


Annotated TAIR IDAT3G13682.1
Annotated Gene NameLSD1-like2
Annotated Gene Symbol(s)LDL2
Annotation TypeOrtholog
Chromosome Positionchr3:4479193-4481509 | Reverse length=746
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.8710319765854
Replicate 25.3335409366251
Replicate 35.9689172265286
Condition 2: 8 Hour
Replicate 16.1694326016541
Replicate 26.265299751152
Replicate 36.9832631519622
Condition 3: 24 Hour
Replicate 17.4451518369528
Replicate 27.4548072424181
Replicate 36.9302314877994


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54659.p1 GENE.S_Transcript_54659~~S_Transcript_54659.p1 ORF type:complete len:757 (+),score=144.43,Amino_oxidase|PF01593.20|6.8e-93,SWIRM|PF04433.13|1.8e-15,NAD_binding_8|PF13450.2|1.2e-12,Pyr_redox_2|PF07992.10|5.3e-06,Pyr_redox_2|PF07992.10|1.1e+03 S_Transcript_54659:1215-3485(+)
ATGGAGACCCCAGTTTCGGATGGGTTTGTGCCAAAGAGGTCATTGAGGAGGAAAGTGAGTTTGAAAAATTATGATGAGAAGTTGATGGATGAACTCATAGAGAAGCACTTAGGTGGTCCCTTGAAGAAAAGGAACAGGACTAGGGAAGACTTGGAGAAAGAAACTGAAAGGGAGGCGATGATAGCTATATCGCTTGGGTTTCCTATCGATGCTTTGCTTGATGAGGAGATAAAGGCAGGGGTTGTGAGGGACATGGGTGGGAAGGAACAAAATGACTACATTGTTGTAAGGAATCATATTCTTGCTAGGTGGAGAAGTAATGTTCGGATGTGGTTGTCCAAAGGGCAGATCAGGGAAACAGTCACTAGCGAGTGTGAATATTTGATATCGTCTGCTTATGACTTCCTTTTGTACAATGGGTATATTAATTTTGGTGTTTCACCAGCTTTCACTTCTCATATTCCTGAGGAGGCATCCGAGGGGTCCGTTGTGATAATTGGTGCTGGATTAGCGGGCCTTGCTGCAGCAAGGCAATTATTGTCGTTTGGTTTTAAGGTTCTTGTTCTTGAAGGTAGGAACCGCCCTGGGGGCAGAGTTTATACTCAGAGGTTGGGTAAAAAGGGCCAATATGTTGCTGTTGAGTTAGGCGGAAGTGTTATTACTGGTATTCATGCTAATCCTTTGGGAGTTTTGGCCAGGCAATTGTCAATACCTCTGCATAAAGTGAGAGATAAATGCCCTTTGTACAAGCCAGACGGGACTCTGGTTGATGAAGAGATAGATTCCACAGTTGAATTCATCTTTAATAGGTTGTTGGATAAAGTAACCGAGTTAAGGAAAATAATGGGTGGTTTTGCGAATGATATTTCTCTGGGTTCTGTGTTGGATACTCTTCAAGATCTTTATTCTGTGGGCAAAAGTCAGGAGGAAAAACAGCTCCTTGATTGGCATTATGCCAACTTGGAATATGCAAATGCCGGTTGTCTATCAGAACTCTCAGCTGCCTATTGGGATCAGGATGATCCCTATGAGATGGGCGGTGACCATTGTTTCCTTGCAGGTGGAAATTGGAGTTTGATCAAATCGTTATGTGAAGGAGTTCCTATTTTATATGGAAAGAAAGTCGATACAGTAAAATACAACTGCGACGGTGTTGAGGTTGTAGCCGGAAACCAAGTGTTCCAAGCGGATGTTGTTCTGTGTACTGTACCTCTTGGAGTTCTAAAGCGGAAGACAATCACATTTGAACCAGAGTTGCCAGAAAGAAAGCTTGATGCCATAGAAAGGTTGGGTTTTGGCTTGCTTAATAAAGTCTCCATGGTATTTCCTCATGTATTTTGGGGGGAGGATCTGGACACATTTGGTTGTCTGGGCAATAATAGCCATCAACGAGGCGAATTTTTCCTGTTTTACAGTTACCACACAGTTTCTGGTGGTGCTGTTCTTGTAGCATTGGTGGCAGGAGAAGCTGCTCAGGATTTTGAGCACACCGACGCATCCATTCTGCTACACCGAGTCCTGAAGGTGCTTAGAGGTATCTATAATCCAAAGGGGATTGACGTGCCTAATCCCATACAGACAGTGTGCACAAAGTGGGGCAGTGATCCCTTGTCCTATGGCTCATATTCTCATGTTCGTGTTGGCTCAACTGGAATTGACTACGACATCCTGGCTGAAAGTGTTGAAAATCGAGTGTTCTTTGCTGGTGAAGCCACTAGCAGGAAATATCCCGCCACAATGCATGGTGCTTTCTTGAGTGGCTTACAGGAAGCTGGTCGCATTTTTCGAACCACAAGGGGCCTGCAGCTGTGTGTCAGGAAGGGAGGTCAAAAAAATCTTGGACCAAACTTTGATACTTTGCTTGATTTGTTTAGAAGGCCTGACTTGGCCATTGGAAAGTTCTTACTTATTCTTGATCCTTTGACAGAAGATCCAAGTTCACTGGGCCTCCTGAGAGTTGCCTTTGATGACTTAAGCAGTGAATTCTGCAGTGAATGCAATTATTTGGTTGAACAGGGTACAAAATGCTTGAATCATGGGAATTTGCCTTTGCAACTTTATACAATCATATCTCGGGAACAAGTTGAACAACTCCAGCGTGTACAAGGAGACCAGGATAAATTACTGTATTTATTCAACAATCTCGGTTTGAAGCTCATGGGACCGAGTGCCCTCGGTGCGCTAGGCAACTCCGTGGTTGCTAGCATTTGTAACGCACGGAGAGGTAGAGGCAGGTCTCGTCTGGGAAGTATACCCCAAGGTGCTGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54659.p1 GENE.S_Transcript_54659~~S_Transcript_54659.p1 ORF type:complete len:757 (+),score=144.43,Amino_oxidase|PF01593.20|6.8e-93,SWIRM|PF04433.13|1.8e-15,NAD_binding_8|PF13450.2|1.2e-12,Pyr_redox_2|PF07992.10|5.3e-06,Pyr_redox_2|PF07992.10|1.1e+03 S_Transcript_54659:1215-3485(+)
METPVSDGFVPKRSLRRKVSLKNYDEKLMDELIEKHLGGPLKKRNRTREDLEKETEREAMIAISLGFPIDALLDEEIKAGVVRDMGGKEQNDYIVVRNHILARWRSNVRMWLSKGQIRETVTSECEYLISSAYDFLLYNGYINFGVSPAFTSHIPEEASEGSVVIIGAGLAGLAAARQLLSFGFKVLVLEGRNRPGGRVYTQRLGKKGQYVAVELGGSVITGIHANPLGVLARQLSIPLHKVRDKCPLYKPDGTLVDEEIDSTVEFIFNRLLDKVTELRKIMGGFANDISLGSVLDTLQDLYSVGKSQEEKQLLDWHYANLEYANAGCLSELSAAYWDQDDPYEMGGDHCFLAGGNWSLIKSLCEGVPILYGKKVDTVKYNCDGVEVVAGNQVFQADVVLCTVPLGVLKRKTITFEPELPERKLDAIERLGFGLLNKVSMVFPHVFWGEDLDTFGCLGNNSHQRGEFFLFYSYHTVSGGAVLVALVAGEAAQDFEHTDASILLHRVLKVLRGIYNPKGIDVPNPIQTVCTKWGSDPLSYGSYSHVRVGSTGIDYDILAESVENRVFFAGEATSRKYPATMHGAFLSGLQEAGRIFRTTRGLQLCVRKGGQKNLGPNFDTLLDLFRRPDLAIGKFLLILDPLTEDPSSLGLLRVAFDDLSSEFCSECNYLVEQGTKCLNHGNLPLQLYTIISREQVEQLQRVQGDQDKLLYLFNNLGLKLMGPSALGALGNSVVASICNARRGRGRSRLGSIPQGAV*

Click here to download the sequence:
Link to NCBI Protein BLAST