Transcript Information: S_Transcript_54776.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value2E-29
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6091177681549
Replicate 21.9899770973445
Replicate 31.7840032290019
Condition 2: 8 Hour
Replicate 12.9548906844655
Replicate 23.5385538371332
Replicate 32.7863853078407
Condition 3: 24 Hour
Replicate 11.8561012116191
Replicate 22.45894949129
Replicate 32.3408694807363


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54776.p1 GENE.S_Transcript_54776~~S_Transcript_54776.p1 ORF type:complete len:765 (+),score=102.77,RVT_1|PF00078.23|8.6e-17,RVT_3|PF13456.2|1e-16,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|5.1e-17 S_Transcript_54776:2467-4761(+)
ATGGAAGAGGATTCAATCAAGCTAATCATGAACTGTATCTGCACAACCTCTGCCTCTTTGATCATAAATGGTAACCTGTCTGACTGGTTCATTCCTTCTAGAGGTATTAGACAAGGGGACCCTCTTTCCCCCTATGTCTTCATCATTTGTATGAACATGCTTTCTAGGCTTATCCAATACTCATGTGATCGAAACTTGTGGTCCCCCTTCTGCATTGGTAAGAAGAAGATCCCCATTTCTCATCTACTTTTTGCGGATGACCTTATTCTCTTTGGGGAAGCAAATGAGCAAACTTTCAATGTTGTTTCTGAAACCCTTGATCTTTTCTGTAGTGTTTCTGGTCAGAAAGTCAATTGTGATAAGAGCAAACTAATTTTCTCCCCTAATACCAATGACCTCGATAAACAATTGGGCCAACAAATCTTGAAGGTTGAAGCTAGTAATGATTTGGGTATGTATCTTGGTTTCCCTTTATCCCCCAATAGACCAAGGAGAAAGCACGTAGACTTCATTGTGAATAAAGTGAAAAAAAAGTTGTCAAACTGGAAATCAAACTTTCTTTCTAAAGCTGGTAAAGTGTGCTTGATTAATTCCACTCTGAATGCCATACCCAACTATTACATGCAACACATCTTGCTCCCAGCCTCTACCCTTGATAAGTTAGATTCTGTGGTGACCAAATTTTTGTGGGGAGATACTAATGAGACTAAGAAACTCCACCTTGTGTGTAAAGAGAAACTTTTTTTGCCCAGAAAGTTTGGGGGCCTTGGGATTAGGAGCAACAGAATTATGAATAAGGTTTATATGGCCAAACTTAACTGGAAATTAATGCATGACAATGATAACCTGGCACACAGAGTTCTTAAAAGCAAATATGTCTTAGATAGAGATGTTGCTGTTGATTTTAAAAACGGTTCACACCTGTGGCAAAACTTTGAGCATGGCTGTAGTTTGTTTAAGGATAGCATCATTTGGTGTCTTGGTGATGGTAAATCTATTTTTTTCTGGGAGGATAGATGGCTCATTAAAGGGTGCCTTAGATCTCAAATTTATGGACCTCTCAATAAGGGTGAAGCTGAGTTAAAGATTTGTGATTGCATTTCCAACCTTGAATGGGATTTCTCAAAATTCTCCTTCCATTTACCTAGTGATATTAGACAACAGATCATATCTACCCCCATTCCCTCTAACCAATTTCATGATGTTCCCTCATCACTTCTTGTTGATAAAGACATTTTTAACCCTAAATCTGCTTATGAAAATCTGATCCCTAGAGGGCATTGTGATGCTGATGTAGACTGGATTTGGAAATCTCCTACTCACCCCAAAGTTCATTTCTTTTTGTGGTTGGCCTGGATGGATAGACTTGCCCATAATGACCATCTTCATTTGAGGGGTATTCTACCTTCTCCTTTGTGTGCCATCTGTCATGTGCAACGTGAGCATTCTTTGCATGTGCTTAGAGATTGTAGTTGGGCTAAAGATGTTTGGATTTTATGTAAACCATCTAATACCTTTTTCTCTTGCAATCTAAAAGAATGGTTCAGCAGCAACATTGTCAGTTCTACCCAAACGGACAATGGTCTCCCTTGGTCTTGTCTTTTTTCCTCCCTGTGTTGGCATATTTGGCATGCTAGGAACCAATTCTTGTTCCAAAATAAGTCGATTCCCTCACCCCTATCTGCGTACAATCTAGCACTTTCTCGAGCCTGGGAATTTTGGTCTCTCATGGGAAAAATCAAGAAGAAAAGCTCTATTCAAACAATCAATGTTGGTTGGAACCCTCCTCCTCCAGATTGGAAAATGTTTAATTGTGATGCTTGCTATAATCCTTTCCAAGCTGCGATTGCAGGGGTTTGTAGGGACACAGGAGGTAACTGGACTTTTGGCTTCGTCAAGAAGTTGGGAGCACCAAATGCATTGACAGCTGAATTAGTAGCTATATTGGAAAGTTTAAAAATGATCAAACTTCGTGGTTGGAGTACAATCATTGTACAATCAGATTCACTCCTTGCCATCAACTCGATTAAATCTGGTAGACCAACATCCAATAACTTACTAATCATTGTCAGGGAGTGCCAGAAGCTGATGGAGGACATTGAAGATATCAAGCTGGAGCATTGTTATAGGGAGCAAAATCGAACAGCAGACTCTCTTGCTCATTTTGAAGTTGATTCTGTAATCAATTGGAATGTACTAAGTATTTTGTCATCCCCTCCTGTTGTCTGCTTAAATGTTTTGAGGGATGACCAATTAGGCAAACAATTTGCCAGAAACATTGTAATTTCTTCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54776.p1 GENE.S_Transcript_54776~~S_Transcript_54776.p1 ORF type:complete len:765 (+),score=102.77,RVT_1|PF00078.23|8.6e-17,RVT_3|PF13456.2|1e-16,zf-RVT|PF13966.2|1.6e+04,zf-RVT|PF13966.2|5.1e-17 S_Transcript_54776:2467-4761(+)
MEEDSIKLIMNCICTTSASLIINGNLSDWFIPSRGIRQGDPLSPYVFIICMNMLSRLIQYSCDRNLWSPFCIGKKKIPISHLLFADDLILFGEANEQTFNVVSETLDLFCSVSGQKVNCDKSKLIFSPNTNDLDKQLGQQILKVEASNDLGMYLGFPLSPNRPRRKHVDFIVNKVKKKLSNWKSNFLSKAGKVCLINSTLNAIPNYYMQHILLPASTLDKLDSVVTKFLWGDTNETKKLHLVCKEKLFLPRKFGGLGIRSNRIMNKVYMAKLNWKLMHDNDNLAHRVLKSKYVLDRDVAVDFKNGSHLWQNFEHGCSLFKDSIIWCLGDGKSIFFWEDRWLIKGCLRSQIYGPLNKGEAELKICDCISNLEWDFSKFSFHLPSDIRQQIISTPIPSNQFHDVPSSLLVDKDIFNPKSAYENLIPRGHCDADVDWIWKSPTHPKVHFFLWLAWMDRLAHNDHLHLRGILPSPLCAICHVQREHSLHVLRDCSWAKDVWILCKPSNTFFSCNLKEWFSSNIVSSTQTDNGLPWSCLFSSLCWHIWHARNQFLFQNKSIPSPLSAYNLALSRAWEFWSLMGKIKKKSSIQTINVGWNPPPPDWKMFNCDACYNPFQAAIAGVCRDTGGNWTFGFVKKLGAPNALTAELVAILESLKMIKLRGWSTIIVQSDSLLAINSIKSGRPTSNNLLIIVRECQKLMEDIEDIKLEHCYREQNRTADSLAHFEVDSVINWNVLSILSSPPVVCLNVLRDDQLGKQFARNIVISS*

Click here to download the sequence:
Link to NCBI Protein BLAST