Transcript Information: S_Transcript_54865.p1


Annotated TAIR IDAT4G19440.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:10602006-10604483 | Reverse length=825
E-Value5.7E-151
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.5484001646907
Replicate 25.9725531327414
Replicate 35.5514498514272
Condition 2: 8 Hour
Replicate 16.3760762968398
Replicate 26.1918045730152
Replicate 36.7177216694487
Condition 3: 24 Hour
Replicate 15.2074671755356
Replicate 25.4484718739098
Replicate 34.7386871306582


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54865.p1 GENE.S_Transcript_54865~~S_Transcript_54865.p1 ORF type:5prime_partial len:495 (+),score=79.97,PPR_2|PF13041.2|4.3e-17,PPR_2|PF13041.2|2.3e-07,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|0.0085,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|2.5e-17,PPR_2|PF13041.2|2.2e-13,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|3.3e-09,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|1.5e-10,PPR_2|PF13041.2|2.3e-12,PPR_1|PF12854.3|7.3e-12,PPR_1|PF12854.3|5e-05,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|54,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|2e-06,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|8.6e-06,PPR_1|PF12854.3|8.9e-10,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.32,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|2.1e-09,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|0.28,PPR|PF01535.16|0.6,PPR|PF01535.16|0.055,PPR|PF01535.16|2.8e-11,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.00013,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|2.6e-07,PPR|PF01535.16|5.4e-09,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|6.1e-07,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|0.54,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|4.7e+02,PPR_3|PF13812.2|20,PPR_3|PF13812.2|2.8e-06,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|6.3e-05,PPR_3|PF13812.2|0.0043,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.0074,MRP-S27|PF10037.5|25,MRP-S27|PF10037.5|11,MRP-S27|PF10037.5|15,MRP-S27|PF10037.5|29,MRP-S27|PF10037.5|1.8e+02,MRP-S27|PF10037.5|0.0043 S_Transcript_54865:1-1485(+)
GATGAGGCTCATTACATGTTACAAGAATTGTTAGATAAGGGTCTTGTTGTCAATGAAATTGTTTACAATACTTTGATTGATGGGTATTGTAGAGTAGGAAGAGTTGTTGAGGCTTTGAAGATAAAAGATGAGATGTTACGAATGGGAATATCGCCTAATTCATCGTCCTATCATTCGCTTCTACATGGCTTTTGCCAAAGTAATATGGCTGAGAAAGCTTCACTGCTGTTGCAGGATATGCTTTCGAGAGGGTTATCTGTAAATTTAGGTGCATTTAATTCTGTCCTAAATAGCCTTTGTCGGAACAGTAACCTGGACTCTGTGTTATGTGTAGTTCAAGTGATGCTATTTAGAAATTTGAAACCCAATGATGGTGTGCTAACAACGATAATGGTTCGCAGTTGTAAAGAGGGCAAACATTCACTGGCTGTTGAGCTTTGGTTCAGGCTTGTGGAAAAAGGGTTTGCACCAAATGTGGTGACTTCAAATGCTATAATTCACAGACTTTGTGAAGCTGGTATTATGCATGAAGCTGCAAGGATTCTTAAGGCGATGGTGAAAAGGAGATTTAAATTGGATAGGACCACATATAACTGTCTCATCTCAGGTTGTTGTAAAGAAGGTAAATGGGAGGAAGCTTTTGAGTTGAGAAAACAGATGGAAGAGAGTGGGATTCAATCAGACACCACTACCTATAACCTACTTCTGCATGCTCTGTGCAGCATGGGCAAGATAGATGAAGCCATGAATTTTTGGGATGAGTGCAAAAGAAATGGAATGGTTTCAAATGTTTATACATATGCAGTTATGATAGATGGATATGGAAAGGCTGAAAAGATTAATGAGGCAGTAAATCTTTTTAATGACCTGGTCAATTTAAAACTCCAGCTAAACTCTGTCGTTTATAATTCACTTATCTCAGCGTACTGTAGGGTTGGGAATATGGTCCAAGCCATTCACCTTTGCGATGACATGAGGAGCAAGGCCATTAAGCATACACAATATACTTATTCCTGTCTTATAAATGGGCTGGGTAGTATTGGCAACCTCCAGGAGGCTGAGGGACTCATTGAAGAAATGAGAAAGGAAGGTTTAATGCCTGACGTTGTTTGTTATACTGCTTTGATGGGTGGTTACTGCAAACTTGGTCTGATGGAAAAGGCGGAGAGCATCTTGCAGGAGATGTGTTCTAATGGCCTATGTCCAAATAAAATAACCTATACCATCATGATTGGTGGCTATTGTAAAATTGGTAATTCAGAAAAGGCAACTAAGGTTCTGGAAAGAATGTTTGAAGATGGAATTATTCCTGATAATGTCACATATAATGCCTTGACAAGTGGCTTGTCCAAGGAAGGAAAGTTGGAAGAAGCATTTAAAATGACAGATCGTATGATGCAGCAGGGAATTCCTTTGGATGAAGTTACATGTACAATGTTGATCCATGGGATGCAGCATCCGCTGGCAGTCACAAATCAAGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54865.p1 GENE.S_Transcript_54865~~S_Transcript_54865.p1 ORF type:5prime_partial len:495 (+),score=79.97,PPR_2|PF13041.2|4.3e-17,PPR_2|PF13041.2|2.3e-07,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|0.0085,PPR_2|PF13041.2|2.4e-14,PPR_2|PF13041.2|2.5e-17,PPR_2|PF13041.2|2.2e-13,PPR_2|PF13041.2|1.5e-06,PPR_2|PF13041.2|1.3e-14,PPR_2|PF13041.2|3.3e-09,PPR_2|PF13041.2|2.2e-18,PPR_2|PF13041.2|1.5e-10,PPR_2|PF13041.2|2.3e-12,PPR_1|PF12854.3|7.3e-12,PPR_1|PF12854.3|5e-05,PPR_1|PF12854.3|0.022,PPR_1|PF12854.3|54,PPR_1|PF12854.3|2.4e-06,PPR_1|PF12854.3|2.6e-10,PPR_1|PF12854.3|2.4e-07,PPR_1|PF12854.3|2e-06,PPR_1|PF12854.3|1.8e-08,PPR_1|PF12854.3|8.6e-06,PPR_1|PF12854.3|8.9e-10,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|1.9e-08,PPR_1|PF12854.3|0.32,PPR|PF01535.16|2.9e+03,PPR|PF01535.16|2.1e-09,PPR|PF01535.16|7.5e-05,PPR|PF01535.16|0.28,PPR|PF01535.16|0.6,PPR|PF01535.16|0.055,PPR|PF01535.16|2.8e-11,PPR|PF01535.16|1.4e-06,PPR|PF01535.16|0.00013,PPR|PF01535.16|8.1e-07,PPR|PF01535.16|2.6e-07,PPR|PF01535.16|5.4e-09,PPR|PF01535.16|1.9e-08,PPR|PF01535.16|6.1e-07,PPR|PF01535.16|6e+03,PPR_3|PF13812.2|0.057,PPR_3|PF13812.2|0.54,PPR_3|PF13812.2|1e+02,PPR_3|PF13812.2|4.7e+02,PPR_3|PF13812.2|20,PPR_3|PF13812.2|2.8e-06,PPR_3|PF13812.2|0.012,PPR_3|PF13812.2|9,PPR_3|PF13812.2|0.015,PPR_3|PF13812.2|6.3e-05,PPR_3|PF13812.2|0.0043,PPR_3|PF13812.2|0.0016,PPR_3|PF13812.2|0.0074,MRP-S27|PF10037.5|25,MRP-S27|PF10037.5|11,MRP-S27|PF10037.5|15,MRP-S27|PF10037.5|29,MRP-S27|PF10037.5|1.8e+02,MRP-S27|PF10037.5|0.0043 S_Transcript_54865:1-1485(+)
DEAHYMLQELLDKGLVVNEIVYNTLIDGYCRVGRVVEALKIKDEMLRMGISPNSSSYHSLLHGFCQSNMAEKASLLLQDMLSRGLSVNLGAFNSVLNSLCRNSNLDSVLCVVQVMLFRNLKPNDGVLTTIMVRSCKEGKHSLAVELWFRLVEKGFAPNVVTSNAIIHRLCEAGIMHEAARILKAMVKRRFKLDRTTYNCLISGCCKEGKWEEAFELRKQMEESGIQSDTTTYNLLLHALCSMGKIDEAMNFWDECKRNGMVSNVYTYAVMIDGYGKAEKINEAVNLFNDLVNLKLQLNSVVYNSLISAYCRVGNMVQAIHLCDDMRSKAIKHTQYTYSCLINGLGSIGNLQEAEGLIEEMRKEGLMPDVVCYTALMGGYCKLGLMEKAESILQEMCSNGLCPNKITYTIMIGGYCKIGNSEKATKVLERMFEDGIIPDNVTYNALTSGLSKEGKLEEAFKMTDRMMQQGIPLDEVTCTMLIHGMQHPLAVTNQE*

Click here to download the sequence:
Link to NCBI Protein BLAST