Transcript Information: S_Transcript_54978.p1


Annotated TAIR IDAT5G09995.2
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G08530.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3125185-3126302 | Reverse length=257
E-Value4E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.0521388352597
Replicate 26.1096955697733
Replicate 38.795766439871
Condition 2: 8 Hour
Replicate 17.7646292949561
Replicate 210.554923460794
Replicate 39.6194594319916
Condition 3: 24 Hour
Replicate 18.5139033091546
Replicate 28.600625931537
Replicate 39.8301301271222


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_54978.p1 GENE.S_Transcript_54978~~S_Transcript_54978.p1 ORF type:3prime_partial len:195 (+),score=31.99 S_Transcript_54978:71-652(+)
ATGTTCTCAGCTTTAAAATTACCTCTCTCAATCCCCCCTAGTCCTACATTCCATCGGAAAATCAACTCCAATGTCACCGGAACCCTAACCCTAACTTCAACTCCGGTAGCACAATTCCGTCTCCCACCTCGTCGATTCACCGTTCTTTCAACTCAATCTTCTCCAAAAGTCACCAATTCAACTGAACCCTCCTTATTGTCCTCTAAATTCACGTCTTCAGTTGGATCTCCTTCGCTAAATCTCTCTCCTTCTCAATGGACTCTTTCTCAGCGCCATTTCACTGTCTTAAATATCGCTGCTTGTGCCGTTGCAATTTCAGCAACTTGGCTCTTTTGTGCTGCAATTCCAACACTTTTGGCTTTTAAAAGAGCAGCAGAGTCGATGGAGAAGCTAATGGATGTTGCAAGAGAAGAGCTTCCGGACACAATGGCAGCTGTTCGGTTATCTGGTATGGAAATCAGTGACTTGACTACGGAGCTGAGTGATTTGGGTCAGGAGATAACACAAGGTGTTAGAGGCTCTACTCGTGCAGTTCGTGTCGCAGAAGAAAAATTGCGTCATTTTGCCAACATGACTTCAAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_54978.p1 GENE.S_Transcript_54978~~S_Transcript_54978.p1 ORF type:3prime_partial len:195 (+),score=31.99 S_Transcript_54978:71-652(+)
MFSALKLPLSIPPSPTFHRKINSNVTGTLTLTSTPVAQFRLPPRRFTVLSTQSSPKVTNSTEPSLLSSKFTSSVGSPSLNLSPSQWTLSQRHFTVLNIAACAVAISATWLFCAAIPTLLAFKRAAESMEKLMDVAREELPDTMAAVRLSGMEISDLTTELSDLGQEITQGVRGSTRAVRVAEEKLRHFANMTSR

Click here to download the sequence:
Link to NCBI Protein BLAST