Transcript Information: S_Transcript_5566.p1


Annotated TAIR IDAT1G12310.1
Annotated Gene NameCalcium-binding EF-hand family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:4187500-4187946 | Reverse length=148
E-Value1.2E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0972027299563
Replicate 23.994125695757
Replicate 34.6106840209001
Condition 2: 8 Hour
Replicate 17.1697432962775
Replicate 28.6787343861008
Replicate 37.7178068914588
Condition 3: 24 Hour
Replicate 13.4838822808275
Replicate 22.1491545460329
Replicate 35.8706482667081


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5566.p1 GENE.S_Transcript_5566~~S_Transcript_5566.p1 ORF type:5prime_partial len:232 (+),score=33.27,EF-hand_1|PF00036.28|3.3e-07,EF-hand_1|PF00036.28|5.2e-06,EF-hand_1|PF00036.28|2,EF-hand_7|PF13499.2|3.9e-05,EF-hand_7|PF13499.2|9.9e-11,EF-hand_6|PF13405.2|1.9e-08,EF-hand_6|PF13405.2|2.8e-06,EF-hand_6|PF13405.2|1.3e+03,EF-hand_6|PF13405.2|4.6e+02,EF-hand_5|PF13202.2|1.6e-05,EF-hand_5|PF13202.2|5.2e+03,EF-hand_5|PF13202.2|0.0016,EF-hand_5|PF13202.2|1e+03,EF-hand_8|PF13833.2|0.12,EF-hand_8|PF13833.2|1.1e+02,EF-hand_8|PF13833.2|0.00018 S_Transcript_5566:2-697(+)
TCAAGGACTCTAAGATTGGATCCCGGACAAAAGGACAACGAAAATAAGAAAGATCTCATCACCGTCTTGTCATTTTGTAGACACAATTTCCCACTCCCTATCATTCATTTCATATATCACCTTAATCCTGTATCTCCCTTCTGCATTTCCTCAAGGCCTCCATCTCCTCTTTTCTCCACCTCATTACATCAACCTCCCAAATCTTACCAAAAAAAAAAAAAAAATCATCAAGTCATAAAAATGGGAAGACAATATGAGTACGTAGAAGACGAGCAGGTAGTCTCAATGAGAGAAGCATTTGCTCTGTTTGACACTGATGGTGATGGCAAGATATCCCCCTCGGATCTAGGCATAGTCATGCGCTCACTCGGGTCAAACCCGACCCAAGCTCAGCTCCGGGTCATCGAGGAACGAGAGAAGCTGACTTCCCCCTTTGAATTTGAGCGGTTCTTGGACTTGATGACCAAGTACATGAAGCCTGATGACCCGTTTGAGTCGGAGCTCCGTGATGCTTTCCGGATCCTGGATAAGGACTCGTCCGGGTTCGTGTCGGTGTCGGATCTTCGACATATATTGACAAGCATAGGGGAGAAGCTCGACCCGGATGAGTTTGATGAGTGGATCCAAGAAGTGGATGTTGGGTCTGATGGAAGGTTTCAGTACGAGGATTTCATCTCTCAACTTCTTGTCAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5566.p1 GENE.S_Transcript_5566~~S_Transcript_5566.p1 ORF type:5prime_partial len:232 (+),score=33.27,EF-hand_1|PF00036.28|3.3e-07,EF-hand_1|PF00036.28|5.2e-06,EF-hand_1|PF00036.28|2,EF-hand_7|PF13499.2|3.9e-05,EF-hand_7|PF13499.2|9.9e-11,EF-hand_6|PF13405.2|1.9e-08,EF-hand_6|PF13405.2|2.8e-06,EF-hand_6|PF13405.2|1.3e+03,EF-hand_6|PF13405.2|4.6e+02,EF-hand_5|PF13202.2|1.6e-05,EF-hand_5|PF13202.2|5.2e+03,EF-hand_5|PF13202.2|0.0016,EF-hand_5|PF13202.2|1e+03,EF-hand_8|PF13833.2|0.12,EF-hand_8|PF13833.2|1.1e+02,EF-hand_8|PF13833.2|0.00018 S_Transcript_5566:2-697(+)
SRTLRLDPGQKDNENKKDLITVLSFCRHNFPLPIIHFIYHLNPVSPFCISSRPPSPLFSTSLHQPPKSYQKKKKNHQVIKMGRQYEYVEDEQVVSMREAFALFDTDGDGKISPSDLGIVMRSLGSNPTQAQLRVIEEREKLTSPFEFERFLDLMTKYMKPDDPFESELRDAFRILDKDSSGFVSVSDLRHILTSIGEKLDPDEFDEWIQEVDVGSDGRFQYEDFISQLLVK*

Click here to download the sequence:
Link to NCBI Protein BLAST