Transcript Information: S_Transcript_55660.p1


Annotated TAIR IDAT1G30450.1
Annotated Gene Namecation-chloride co-transporter 1
Annotated Gene Symbol(s)CCC1, ATCCC1, HAP5
Annotation TypeOrtholog
Chromosome Positionchr1:10762905-10769061 | Forward length=975
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.714561800572
Replicate 28.4822176621938
Replicate 39.6739505223794
Condition 2: 8 Hour
Replicate 19.9431267736326
Replicate 210.202294982943
Replicate 311.311784158472
Condition 3: 24 Hour
Replicate 19.8503002242863
Replicate 28.4352018545915
Replicate 38.4073481350387


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_55660.p1 GENE.S_Transcript_55660~~S_Transcript_55660.p1 ORF type:complete len:978 (+),score=176.59,AA_permease|PF00324.17|1.3e-57,SLC12|PF03522.11|2.3e-12,SLC12|PF03522.11|1.1e-26,AA_permease_2|PF13520.2|1.2e-13 S_Transcript_55660:386-3319(+)
ATGGATGATGTAGAGATTGAAGAAGGAGGTGGAGGAGGAGAGGAAAGTGGATTCCCATTGGGTAGGAAATACAAGCCTGTTGTTGCTGATGATCGTGCTGTTCTTGAAATGTCCTCTCTAGATCCTTCTTCCTCTGATAATCCCAGGAAACTTAAGGTCAACACGGACGAAAACATGAGGTCGGATGGGGTAGAAAGCTCAACGGCTTCACATGCTGATGTTAATGGTATACAGAGGGAGTCAAAACTTGAATTGTTTGGTTTTGATTCCCTTGTGAATATTTTGGGTCTCAAAAGTATGACTGGAGAGCAGATTCATGCCCCTTCTAGTCATAGAGATGGAGAGGATGTTTCTATTACTCTTGAGCGTCCAAAGACTGCTGATATCAAATTGGGAACGGTGATGGGTGTATTTTTGCCATGCTTGCAAAACATATTGGGCATCATTTACTACATTCGGTTTACCTGGATTGTAGGTATGGCTGGTGTAGGCGAGTCTTTGTTACTTGTGTCTTTCTGCTGTTTGTGCACGTTCTTGACTGCAGTGTCATTGAGTGCAATTGCCACAAATGGTGCAATGAAGGGTGGGGGGCCATATTATCTCATTGGTCGAGCCCTTGGTCCAGAAGTTGGTGTTAGCATTGGACTATGTTTCTTCCTCGGCACTGCAGTTGCTGGAGCTCTGTATGTGCTGGGAGCTGTTGAAACCTTCCTTAGTGCTGTACCTGGTGCTGGGATTTTTACAGAGACAATTACGAAAGTGAATGGCACAACAGTCAGTCCCATACACCAAACAAGCGTGCATGATCTACAAATTTATGGGATTGTTGTGACAATTCTTCTTGTTTTTATCGTGTTTGGTGGCGTAAAGATGATTAATCGAGTAGCGCCTGCTTTCCTCATACCAGTTTTGTTCTCAGTGTTCTGCATATTCATTGGAATTTTTGCTTCTGGGAAAGACAAGCCTGCTGAGGGAATCACTGGCATGAGTTTGACAACATTCAAAGATAACTGGAGTTCTGATTACCAAATGACAAATGAAGCTGGCATACCTGATCCAAATGGGAAATCTTACTGGAGTTTCAATGCTTTGGTTGGTCTTTTCTTCCCTGCTGTAACTGGTATCATGGCTGGTTCAAATCGTTCAGCTTCACTCAAAGATACTCAGCGTTCAATACCTGTTGGCACACTGGCTTCGCAACTTACAACCACTTGTCTATATCTGGTCTCAGTTTTGGTTTTTGGTTCTTTTGCGACCCGTGAGAAGCTTCTGACAGACAGGCTACTTACAGCAACAGTTGCTTGGCCTCTTCCAGCAATAATTTATGTGGGAATTATTCTTTCAACCTTGGGTGCTGCACTTCAGAGTCTGACAGGCGCCCCACGTCTTTTAGCGGCAATAGCAAATGATGATATTTTACCTGTTCTTAATTACTTCAAGGTGGCTGATGGGAGAGAGCCTCATATTGCTACCCTCTTTACTGCCTTCATTTGTCTTGGCTGTGTTGTGATTGGGAATCTGGATATTATCTCTCCCACGATCACTATGTTTTATCTGCTGTGTTATGCGGGTGTGAATTTATCCTGCTTCCTTCTGGACCTTCTAGATGCCCCTAGCTGGCGTCCACGGTGGAAATTTCACCACTGGAGCCTCTCACTTCTTGGAGCATCTATCTGTATAGTGATTATGTTCTTGATCTCCTGGTCATTCACCATTATAGCTCTAGCGCTTGCTTGCCTTATTTACAAATATGTGTGCCTGAAAGGGAAGGCTGGAGACTGGGGTGATGGCTTCAAAAGTGCATATTTTCAACTTGCACTTCAGAGTCTCCGTTCTCTTGGAGCAAACCAGGTGCACCCGAAAAACTGGTATCCAATTCCCCTTATATTTTGTCGCCCTTGGGGAAAACTACCTGAGAATGTACCATGTCATCCAAAGCTTGCAGATTTTGCAAATTGCATGAAGAAGAAAGGTCGTGGAATGTCAATATTTGTTTCTATCCTTGATGGGGATTATCATGAATGCGCTGAAGATGCCAAAGTTGCCGGCCAGCAGTTGAGTGCATATATTGAATACAAGCAATGTGAAGGTGTGGCAGAGGTTGTGGTGGCTCCCAACTTGTCTGCTGGTTTCTGTGGCATCATCCAGACCATGGGCCTCGGAAATCTCAAACCTAATATTGTGGTTATGCGGTACCCCGAAATTTGGCGTCGTGAAAATCTAACGGAAATCCCGGCAACCTTTGTTGGAATAATTAATGACTGCATTGTGGCAAATAAGGCAGTGGTCATTGTCAAGGGCCTTGAGGAGTGGCCCAACGTTTATCAGAGGCAGTATGGTTCAATCGATCTTTATTGGATTGTACGAGATGGAGGTTTGATGTTGCTTCTTTCGCAGCTTCTCCTGACCAAAGAGAGCTTTGAGAATTGCAAGATTCAAGTATTCTGTATTGCAGAAGAGGATTCTGACGCCGAAGGGCTCAAAGCTGATGTGAAGAAGTTCCTTTACGATTTGCGACTTCAGGCAGAAGTTTTTGTTATAACGATTAAAACATGGGACGCTCAAGCAGATGGTGGGTCTGCACAGGACGAATCTCTTGAAGCATTCACAGCTGCTCAGCGACGGATTTCTGACTACTTGTCGAAGATGAAGGAAACAGCTGAGACAGAAAAGACCCCACTGATGGCAGATGGGAAGCAGGTAATTGTGAACGAGCAACAAGTCGAGAAGTTTCTCTACACCACCTTGAAGTTGAATTCAACAATACTAAGATACTCGAGAATGGCTGCTGTAGTACTTGTTAGCCTACCGCCACCACCTCCCAGTCACCCAGCATATTTCTACATGGAGTATTTGGATCTCCTGGTGGAAAATATTCCTAGGCTTTTAATTGTAAGAGGATACAGAAAAGATGTGGTTACTTTGTTCACGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_55660.p1 GENE.S_Transcript_55660~~S_Transcript_55660.p1 ORF type:complete len:978 (+),score=176.59,AA_permease|PF00324.17|1.3e-57,SLC12|PF03522.11|2.3e-12,SLC12|PF03522.11|1.1e-26,AA_permease_2|PF13520.2|1.2e-13 S_Transcript_55660:386-3319(+)
MDDVEIEEGGGGGEESGFPLGRKYKPVVADDRAVLEMSSLDPSSSDNPRKLKVNTDENMRSDGVESSTASHADVNGIQRESKLELFGFDSLVNILGLKSMTGEQIHAPSSHRDGEDVSITLERPKTADIKLGTVMGVFLPCLQNILGIIYYIRFTWIVGMAGVGESLLLVSFCCLCTFLTAVSLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGTAVAGALYVLGAVETFLSAVPGAGIFTETITKVNGTTVSPIHQTSVHDLQIYGIVVTILLVFIVFGGVKMINRVAPAFLIPVLFSVFCIFIGIFASGKDKPAEGITGMSLTTFKDNWSSDYQMTNEAGIPDPNGKSYWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPVGTLASQLTTTCLYLVSVLVFGSFATREKLLTDRLLTATVAWPLPAIIYVGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVADGREPHIATLFTAFICLGCVVIGNLDIISPTITMFYLLCYAGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGASICIVIMFLISWSFTIIALALACLIYKYVCLKGKAGDWGDGFKSAYFQLALQSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKVAGQQLSAYIEYKQCEGVAEVVVAPNLSAGFCGIIQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLEEWPNVYQRQYGSIDLYWIVRDGGLMLLLSQLLLTKESFENCKIQVFCIAEEDSDAEGLKADVKKFLYDLRLQAEVFVITIKTWDAQADGGSAQDESLEAFTAAQRRISDYLSKMKETAETEKTPLMADGKQVIVNEQQVEKFLYTTLKLNSTILRYSRMAAVVLVSLPPPPPSHPAYFYMEYLDLLVENIPRLLIVRGYRKDVVTLFT*

Click here to download the sequence:
Link to NCBI Protein BLAST