Transcript Information: S_Transcript_5572.p1


Annotated TAIR IDAT3G54630.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Kinetochore protein Ndc80 (InterPro:IPR005550); Has 24780 Blast hits to 15608 proteins in 1321 species: Archae - 545; Bacteria - 2969; Metazoa - 12597; Fungi - 2181; Plants - 1581; Viruses - 39; Other Eukaryotes - 4868 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:20221195-20222901 | Reverse length=568
E-Value1.2E-147
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.782718288481
Replicate 220.253101757858
Replicate 320.245167533307
Condition 2: 8 Hour
Replicate 125.53092104285
Replicate 223.465062883902
Replicate 324.663886495816
Condition 3: 24 Hour
Replicate 119.709955959227
Replicate 220.844378186274
Replicate 320.952344043342


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5572.p1 GENE.S_Transcript_5572~~S_Transcript_5572.p1 ORF type:complete len:573 (+),score=146.39,Ndc80_HEC|PF03801.9|1.3e-28 S_Transcript_5572:398-2116(+)
ATGAGACCAACACGATCAAGAAAACCAGCAGCACCACTACAACAACAACCGCCAGCAACCCCTTCCTTTACCAACGCCGGCGGCCGCGACTCCGACGTCAGCTTCTGTAGTAGTCGTCCATCATCATCATCAATCGGAGTTTCCAGTCGCACAATCTCAGTCACAGATCCGGCCTTCAAACAATCAGCAATTAGGTCCATCAATTCTTACCTTGCTTTTCATAATGTCCCCATTTCTCTCTCCTTGAAGCCCCTCTCTTCTGCTAAAGACATTACTGATACTTTCCGGTTTCTATTCTCTCGTCTCGAGTTCTCGTTCTCTAACAAGCTTGAAGATGACCTCATGCTTCTCCTCAAGTACCTTAATTGTCCTCACAAGATCAATAAATCGGCTCTTCGAGCTCCTGGTGCTCCGCACTCGTTCCCTCATCTTCTTGCTGTCCTCCATTGGCTTGTCCAGCTCGCTAATTTCGCTGATCACCTTCGCTCTGACGAGAATTCCAGCAGGTATGACTTTATGAAGGATACTCTGACAACCTATGCAGTGGATAGTTACTTGCTATATATGAAAGGGGATGATGAGGGTGTTGAGGTTTTGGATGACGAACTTGCTGAAAAGATGGAGAAAGAAAGGGATTCATTGGTGGATAATTTGAACTCATTAGGTGAGGAAGCAAAGAAGTTAGAAATACAGATTGAAGGATTGAAAACTACGCCTTCGGAGAGGGAGGTGTATGAGAATCAGAGGATGGATTTGGAAGGAGATTTGGTGAAGTTCCAGGGCTTTACTGCCTCTCTGCGGGATGCAAATTCTATTACCGAGAAGGCGTTGGAGGAGAAGGGGAAGGAGCTGGGTGCTAAAGTGGAGGAGATTAGACGGATACAAGAGGAGAATGAGGAGCTCAAGAAGAAGGTCGAGGCTCAGGGAATTAACTTGAGGGATGCTGAGAGGATGAAGAGGGAGCTGCTGGCTGTGGAGAGGGAGATTACGGAGGCTGAGTCCTGCAGGAGTTCATGGGAGGAGAAATGTTGGGATCTTAATGCTGCCATTGGGCAGAAGTTTAAAGAGCTTGAGGCCTTTTCCATGGAATGCAATCAGGCTCTTCGAAGATTGAAGCTTGGAGGTGGTTTTCAGTATGTCTTGAATGCCAAAGGGTCCACTCCTGCTGAAGTATTGGGGATCAACTATAAAACAACACTCAAACCTGCAATCAATTCTTTTGCTGAAGAGATTAAGAAAAGTGCCACCGCCAAGTTGGAGGAGTTTATTACCCTTCAGCAGCAATCCAAGGAAATTTCTGCCAGGATTGAAACAAAAAGAAGCCGTCTTTCTGCACTTCAATCCCATATTGATGATAGGGAACGACAGTTGAATGTAGTGAGGAAAGACATAGAGGAATATACGTCCTGGTGCGCCAGTGAAGGACGAAGGATTAGAGAAGATGTGGAGGTCAAGGCACACAGCCTTGATATTATGGAAAGAGAAGCACTTGATGCCCTGAAGGCTGCTGAGCTGAAGTTGCAAGAGGAAGTGGTGCAAAGCGAGCAAGAAATACAACTATGCGCCTATGAGCTATTTGCATTGATTGATTCGGTCTCCAGATACAAAGAGCACACCGAAACAAAGATTCTGGAGATGCACAAGGATCTGTCTGAAACTTCTGAGTTTATCTCCAATGCTTACAAGAAGACCTTGCCAACACAGCTCATTGGTTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5572.p1 GENE.S_Transcript_5572~~S_Transcript_5572.p1 ORF type:complete len:573 (+),score=146.39,Ndc80_HEC|PF03801.9|1.3e-28 S_Transcript_5572:398-2116(+)
MRPTRSRKPAAPLQQQPPATPSFTNAGGRDSDVSFCSSRPSSSSIGVSSRTISVTDPAFKQSAIRSINSYLAFHNVPISLSLKPLSSAKDITDTFRFLFSRLEFSFSNKLEDDLMLLLKYLNCPHKINKSALRAPGAPHSFPHLLAVLHWLVQLANFADHLRSDENSSRYDFMKDTLTTYAVDSYLLYMKGDDEGVEVLDDELAEKMEKERDSLVDNLNSLGEEAKKLEIQIEGLKTTPSEREVYENQRMDLEGDLVKFQGFTASLRDANSITEKALEEKGKELGAKVEEIRRIQEENEELKKKVEAQGINLRDAERMKRELLAVEREITEAESCRSSWEEKCWDLNAAIGQKFKELEAFSMECNQALRRLKLGGGFQYVLNAKGSTPAEVLGINYKTTLKPAINSFAEEIKKSATAKLEEFITLQQQSKEISARIETKRSRLSALQSHIDDRERQLNVVRKDIEEYTSWCASEGRRIREDVEVKAHSLDIMEREALDALKAAELKLQEEVVQSEQEIQLCAYELFALIDSVSRYKEHTETKILEMHKDLSETSEFISNAYKKTLPTQLIGF*

Click here to download the sequence:
Link to NCBI Protein BLAST