Transcript Information: S_Transcript_56110.p1


Annotated TAIR IDAT5G09320.1
Annotated Gene NameVacuolar sorting protein 9 (VPS9) domain
Annotated Gene Symbol(s)VPS9B
Annotation TypeHomolog
Chromosome Positionchr5:2889007-2892016 | Reverse length=712
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.8070556394258
Replicate 22.3152310029491
Replicate 33.7568536466594
Condition 2: 8 Hour
Replicate 12.1062113893465
Replicate 23.3143479466262
Replicate 34.473696410922
Condition 3: 24 Hour
Replicate 11.7529844776403
Replicate 21.6788008575072
Replicate 31.4012246891731


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56110.p1 GENE.S_Transcript_56110~~S_Transcript_56110.p1 ORF type:5prime_partial len:162 (+),score=24.54 S_Transcript_56110:3-488(+)
CTAAACCCCTCCCTCTCTTGTCTCTCTCAACTCTCAAGTCTCAACTTCCCTAGACCTTCCTTACTCCCTTTCCATATCCCACAACAACTCTCCAAACTCCATCAAAAAATGACCACCCTCAACCTCAAACTCCAATTCTCTAAACTGGGTATCCCTCAAAACCCCAGAATTCACACTTTCAACCGCAATCATAATCCCTATCCAATGAAACTCCACTTGGGTTCCTCTCCTTACAGAAAAATTTCAAGTGGGTTAAGGAGCATAGGACCCAAGAAGCCCTTGTGGAGATCAAGGGTTTTGTCCACTGAAGCCATTCAAGCAGTTCAGGCCCTTAAACTTGCCAAAAATCCCTCCAAATTAGAGCAGGTCTTGAATACCAAGCTTTCTAGGCTCTTGAAGGCTGACTTGTTGGACACTTTGACTGAGCTTCAGAGACAAAATGAACTTCATTTGGCTCTCAAGGGCTCTAGGTGTTCGACTTCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56110.p1 GENE.S_Transcript_56110~~S_Transcript_56110.p1 ORF type:5prime_partial len:162 (+),score=24.54 S_Transcript_56110:3-488(+)
LNPSLSCLSQLSSLNFPRPSLLPFHIPQQLSKLHQKMTTLNLKLQFSKLGIPQNPRIHTFNRNHNPYPMKLHLGSSPYRKISSGLRSIGPKKPLWRSRVLSTEAIQAVQALKLAKNPSKLEQVLNTKLSRLLKADLLDTLTELQRQNELHLALKGSRCSTS*

Click here to download the sequence:
Link to NCBI Protein BLAST