Transcript Information: S_Transcript_56112.p1


Annotated TAIR IDAT5G09320.1
Annotated Gene NameVacuolar sorting protein 9 (VPS9) domain
Annotated Gene Symbol(s)VPS9B
Annotation TypeHomolog
Chromosome Positionchr5:2889007-2892016 | Reverse length=712
E-Value6E-27
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.8189896403309
Replicate 27.5374654716065
Replicate 37.7446365048572
Condition 2: 8 Hour
Replicate 111.687224586614
Replicate 29.5538143657195
Replicate 310.468281030204
Condition 3: 24 Hour
Replicate 15.6750053196206
Replicate 26.0490600292742
Replicate 38.0782348628486


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56112.p1 GENE.S_Transcript_56112~~S_Transcript_56112.p1 ORF type:complete len:281 (+),score=58.39,PPR_2|PF13041.2|4.3e+02,PPR_2|PF13041.2|8.7e-06,PPR_2|PF13041.2|9.7e-10,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|1.4e+04,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.00088,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|1.1e+04,PPR_1|PF12854.3|3.4e+03,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|1.6e+03 S_Transcript_56112:79-843(+)
ATGACCACCCTCAACCTCAAACTCCAATTCTCTCAACTGGGTATCCCTCAAAACACCAGAACTCACACTTTCAACCACAATCATAACCCCTATCCAATGAAACTCCACTTGGGTTCCTCTCCTTACAGAAAAATTTCAAGTGGGTTAAGGAGCATAGGACCCAAGAAGCCCTTGTGGAGATCAAGGGTTTTGTCCACTGAAGCCATTCAAGCAGTTCAGGCCCTTAAACTTGCCAAAAATCCCTCCAAATTAGAGCAGGTCTTGAATACCAAGCTTTCTAGGCTCTTGAAGGCTGACTTGTTGGACACTTTGACTGAGCTTCAGAGACAAAATGAACTTCATTTGGCTCTCAAGGTGTTCGACTTCGTGAAAAAGGAGTCATGGTATACCACAGATGTTTCCTTATACTATGACATGATTCTACTGCTGGGAAAGAACAAGATGGTTGATAAGGCTGAAGAACTTTTTAAAGAATTGAAGAAAGAAGGTCTACAGCCGGACACACGTGTGTATACTGAGCTTATTGGTGCATATTTCACAGTAAATATGATAGAGAAAGCTATGGAAACTTATGATCAAATGAAGGCTTCTGGTTGTGCACCAGATAAGTTAACATTGATGATTATGGTGAGGAATCTGGAGAAGGCAGGAGAAGAAGAGCTTGCAGCATCCGTGAAGAAAGACTTTGAAGAATACGTGGATGATCCCGAGGAGTTTCTAGAAGAATTAGAAAAGAAATATTCAAGAGATCCCATTTTGATCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56112.p1 GENE.S_Transcript_56112~~S_Transcript_56112.p1 ORF type:complete len:281 (+),score=58.39,PPR_2|PF13041.2|4.3e+02,PPR_2|PF13041.2|8.7e-06,PPR_2|PF13041.2|9.7e-10,PPR_3|PF13812.2|2.9e+03,PPR_3|PF13812.2|0.025,PPR_3|PF13812.2|0.0024,PPR_3|PF13812.2|1.4e+04,PPR|PF01535.16|2.6e+03,PPR|PF01535.16|0.00012,PPR|PF01535.16|0.00088,PPR|PF01535.16|3.3e+03,PPR|PF01535.16|1.1e+04,PPR_1|PF12854.3|3.4e+03,PPR_1|PF12854.3|1.1,PPR_1|PF12854.3|0.0051,PPR_1|PF12854.3|1.6e+03 S_Transcript_56112:79-843(+)
MTTLNLKLQFSQLGIPQNTRTHTFNHNHNPYPMKLHLGSSPYRKISSGLRSIGPKKPLWRSRVLSTEAIQAVQALKLAKNPSKLEQVLNTKLSRLLKADLLDTLTELQRQNELHLALKVFDFVKKESWYTTDVSLYYDMILLLGKNKMVDKAEELFKELKKEGLQPDTRVYTELIGAYFTVNMIEKAMETYDQMKASGCAPDKLTLMIMVRNLEKAGEEELAASVKKDFEEYVDDPEEFLEELEKKYSRDPILI*

Click here to download the sequence:
Link to NCBI Protein BLAST